View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4156_low_2 (Length: 506)

Name: NF4156_low_2
Description: NF4156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4156_low_2
NF4156_low_2
[»] chr4 (3 HSPs)
chr4 (186-309)||(167262-167384)
chr4 (319-491)||(2306647-2306820)
chr4 (23-70)||(167481-167528)
[»] chr8 (2 HSPs)
chr8 (317-491)||(21538094-21538269)
chr8 (317-366)||(37633313-37633362)
[»] chr7 (1 HSPs)
chr7 (317-491)||(13332659-13332834)
[»] chr1 (2 HSPs)
chr1 (317-399)||(35840792-35840875)
chr1 (447-491)||(35840690-35840734)
[»] chr6 (1 HSPs)
chr6 (317-396)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 167384 - 167262
Alignment:
Q  186 cattgtcttagtgaacataacttgattggtagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaatctcagtgtggtga 285  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||    
T  167384 cattgtcctagtgaacataactcgattgatagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaacct-tgtgcggtga 167286  T
Q  286 atatttagtcattaatcacttgat 309  Q
    ||||||||||||||||||||||||    
T  167285 atatttagtcattaatcacttgat 167262  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 491
Target Start/End: Original strand, 2306647 - 2306820
Alignment:
Q  319 gaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnn 418  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||||||||||||||||||| ||                       
T  2306647 gaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatagcgtgtattccaccaaatgcaacttcttttgttttttatttt 2306746  T
Q  419 natattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaat 491  Q
     ||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| ||||    
T  2306747 tatattaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataat 2306820  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 167528 - 167481
Alignment:
Q  23 gttatattatgaagaatattatccattcagtgacgcataaaatgtcat 70  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||    
T  167528 gttatattatgaagaatattatccattcagtggtccataaaatgtcat 167481  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 317 - 491
Target Start/End: Complemental strand, 21538269 - 21538094
Alignment:
Q  317 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 416  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||  |||||||||||||||||||||||||                     
T  21538269 gggaaataccatttcccacgaaactgaatccacggaaaatacgaattacaatatacgctggcgtgtattccaccaaatgctactttttttgttttttatt 21538170  T
Q  417 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaat 491  Q
       ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  21538169 tttatattaaaataatatttgtgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaat 21538094  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 37633313 - 37633362
Alignment:
Q  317 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattaca 366  Q
    |||||||||||| ||| |||||| |||||  |||||||||||||||||||    
T  37633313 gggaaatgccatatcctacgaaagtgaattcacgggaaatacgaattaca 37633362  T

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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 317 - 491
Target Start/End: Complemental strand, 13332834 - 13332659
Alignment:
Q  317 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 416  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||||                     
T  13332834 gggaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatggcttgtattccaccaaatgctactttttttgttttttatt 13332735  T
Q  417 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaat 491  Q
       ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||    
T  13332734 tttatattaaaataatgtttgtgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaat 13332659  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 35840875 - 35840792
Alignment:
Q  317 gggaaatgcc-atttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctac 399  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| ||||||||    
T  35840875 gggaaatgcccatttcccacgaaactgaatccacggaaaatacgaattatactatacgatggcatgtattccaccgaatgctac 35840792  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 35840734 - 35840690
Alignment:
Q  447 tttagtacaattcgtggttttggtttattttcattcgtggttaat 491  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  35840734 tttagtacaattcatggttttcgtttattttcattcgtggttaat 35840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 4087928 - 4088006
Alignment:
Q  317 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgc 396  Q
    |||||||  ||||||| || ||||||| || | |||||||||||||||||  |||| |||||||||||||||||||||||    
T  4087928 gggaaatatcatttcctactaaactga-tccaagggaaatacgaattacacaatacgatggcgtgtattccaccaaatgc 4088006  T

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