View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4156_low_3 (Length: 456)

Name: NF4156_low_3
Description: NF4156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4156_low_3
NF4156_low_3
[»] chr4 (13 HSPs)
chr4 (1-445)||(31161414-31161842)
chr4 (1-442)||(31150106-31150545)
chr4 (295-405)||(31476882-31476992)
chr4 (199-361)||(31019754-31019916)
chr4 (295-361)||(31029731-31029797)
chr4 (295-361)||(31159299-31159365)
chr4 (199-361)||(31489630-31489792)
chr4 (295-420)||(31528459-31528584)
chr4 (365-442)||(31034102-31034179)
chr4 (295-411)||(31496829-31496945)
chr4 (295-374)||(31502035-31502114)
chr4 (114-188)||(31477102-31477176)
chr4 (41-86)||(31245308-31245353)
[»] scaffold1749 (1 HSPs)
scaffold1749 (295-405)||(61-171)
[»] scaffold0428 (2 HSPs)
scaffold0428 (295-405)||(8822-8932)
scaffold0428 (43-99)||(8571-8627)
[»] chr2 (1 HSPs)
chr2 (295-405)||(17438736-17438846)
[»] chr6 (6 HSPs)
chr6 (295-405)||(31560717-31560827)
chr6 (295-405)||(33306548-33306658)
chr6 (295-405)||(31567036-31567146)
chr6 (295-405)||(33412015-33412125)
chr6 (295-405)||(33642510-33642620)
chr6 (43-99)||(33264460-33264516)


Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 31161414 - 31161842
Alignment:
1 ctccccgcacataaccattcatgactcagctagtttttcgagttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
31161414 ctccccgcacataaccattcatgactcagctagtttttcgagttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcct- 31161512  T
101 cctactttgtttaaagttagatgcattgtaaagattgcatatctgaaggtatttttcacctagagtttgacatagagtttacttttgagcactgatcgga 200  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
31161513 ---actttgtttaaagttagatgcattgtaaagattgcatatctgaaggtatttttcacctaga------------gtttacttttgagcactgatcgga 31161597  T
201 ccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgcagtagcgatagctttcttcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31161598 ccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgcagtagcgatagctttcttcc 31161697  T
301 ctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagc 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31161698 ctattccacccatcccacaaactcctacaacccgcacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcccagc 31161797  T
401 taaataatttggaagacttgtagacttgtaacccaatatattcat 445  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
31161798 taaataatttggaagacttgtagacttgtaacccagtatattcat 31161842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 31150106 - 31150545
Alignment:
1 ctccccgcacataaccattcatgactca--gctagtttttcgagttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcc 98  Q
    |||||||||| |||||||||| || |||  |||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    || ||    
31150106 ctccccgcacctaaccattcacgattcacggctaatttctcgagttgttcaacttgatcaacattgtcaagaattataagggcctttacacagtgtaacc 31150205  T
99 tgcctactttgtttaaagttagatgcattgtaaagattgcatatctgaaggtatttttcacctagagtttgacatagagtttacttttgagcactgatcg 198  Q
    |    ||||||| | |||||||| || ||||||| ||||||| ||||||| | || |||| |||||||||||   ||| ||  |||||||||||  ||      
31150206 t----actttgtatcaagttagacgcgttgtaaatattgcatgtctgaagttgttcttcaactagagtttgatgcagaattagcttttgagcaccaatta 31150301  T
199 gaccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgcagtagcgatagctttctt 298  Q
    ||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||    |||||| |  | | ||||    
31150302 gaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgagagattttgttgtatagaatagtagcaagggttgtctt 31150401  T
299 ccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatccca 398  Q
    ||||| ||||||||||||||||| ||||||||| |  |||||||||| ||| |||||||||||||||||||||||||| | |  | |||||| ||||||     
31150402 ccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccg 31150501  T
399 gctaaataatttggaagacttgtagacttgtaacccaatatatt 442  Q
     ||||||  ||||||||| | | | ||||||||||||| |||||    
31150502 actaaattttttggaagattagaaaacttgtaacccaacatatt 31150545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 31476992 - 31476882
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||||||||||||||||| |||||||||    ||||||||||| || |||||||||||| | ||||||||||||| | || ||||||||||    
31476992 tcttccctattccacccatcccacaaattcctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccat 31476893  T
395 cccagctaaat 405  Q
    |||| ||||||    
31476892 cccaactaaat 31476882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 31019754 - 31019916
Alignment:
199 gaccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgcagtagcgatagctttctt 298  Q
    |||||||||| ||||| ||||| ||||||||||||||||   |  |  ||  |||||||||| ||||||     ||||| |||||||| | || | ||||    
31019754 gaccatcatgtctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtctt 31019853  T
299 ccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaa 361  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||    
31019854 ccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaa 31019916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 31029731 - 31029797
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaa 361  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||    
31029731 tcttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaa 31029797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 31159299 - 31159365
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaa 361  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||| || |||||||||||    
31159299 tcttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaaagtaa 31159365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 361
Target Start/End: Complemental strand, 31489792 - 31489630
Alignment:
199 gaccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgcagtagcgatagctttctt 298  Q
    |||||||||| ||||| ||||| ||||||||||||||||   |  |  ||  |||||||||| ||||||     ||||| |||||||| | || | ||||    
31489792 gaccatcatgtctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtctt 31489693  T
299 ccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaa 361  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||  || |||||||||||    
31489692 ccctattccacccatcccacaaattcctacaacccgaacatcatcaatggagtccaaaagtaa 31489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 420
Target Start/End: Original strand, 31528459 - 31528584
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||| ||||||||||||| ||| ||| |||| ||  ||||||||||||  ||||||||||||| | ||||| |||  |||| | ||||||| | |    
31528459 tcttccctactccacccatcccagaaattccaacaatcctaacatcatcaaccacatccaaaagtaaaagcttttccaatctttctatgagagaatgcgt 31528558  T
395 cccagctaaataatttggaagacttg 420  Q
    |||| |||||| ||||||||| ||||    
31528559 cccaactaaatcatttggaaggcttg 31528584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 31034102 - 31034179
Alignment:
365 tttttctaattcttctgtaagagaatccatcccagctaaataatttggaagacttgtagacttgtaacccaatatatt 442  Q
    |||||||||||||||| |||||||||| |||||| ||||||  ||||||||||||| | ||  |||||||||| ||||    
31034102 tttttctaattcttctataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatt 31034179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 411
Target Start/End: Complemental strand, 31496945 - 31496829
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| ||||||||||||| |||||  || |   |||||| |||||| |||||||||||| | |||||||||| ||   || |||| |||||    
31496945 tcttccctattcctcccatcccacaaattcctatgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatttttgcatatgagagtccat 31496846  T
395 cccagctaaataatttg 411  Q
    |||| |||||| |||||    
31496845 cccaactaaatcatttg 31496829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 31502114 - 31502035
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaat 374  Q
    ||||||||||||||||||||||||| | ||||||| |    ||||||||||| || ||||| |||||| |||||||||||    
31502114 tcttccctattccacccatcccacagattcctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaat 31502035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 31477176 - 31477102
Alignment:
114 aagttagatgcattgtaaagattgcatatctgaaggtatttttcacctagagtttgacatagagtttacttttga 188  Q
    |||||||||||| || |||||||||||||||||  ||  |||||||| |||||||||  |||| ||| |||||||    
31477176 aagttagatgcagtggaaagattgcatatctgattgtgattttcaccgagagtttgatgtagaatttgcttttga 31477102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 31245353 - 31245308
Alignment:
41 agttgttcaacttgatcaacattgtcaagaattaaaagggacttta 86  Q
    ||||||||||||||||||||||| ||||||| || |||||| ||||    
31245353 agttgttcaacttgatcaacattatcaagaactataagggatttta 31245308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 61 - 171
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| |||||||| |||| ||||| ||| |  ||| |||||||||||| ||||||||| || | || |||| |||||||| ||||||  ||    
61 tcttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttat 160  T
395 cccagctaaat 405  Q
    |||| ||||||    
161 cccaactaaat 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 8822 - 8932
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| |||||||| |||| ||||| ||| |  ||| |||||||||||| ||||||||| || | || |||| |||||||| ||||||  ||    
8822 tcttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttat 8921  T
395 cccagctaaat 405  Q
    |||| ||||||    
8922 cccaactaaat 8932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 8571 - 8627
Alignment:
43 ttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcct 99  Q
    ||||||||||||||| ||||| |||||||||| ||||| |||| ||| || ||||||    
8571 ttgttcaacttgatccacattatcaagaattagaagggtcttttcacgacttagcct 8627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 17438846 - 17438736
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| |||||||| |||| ||||| | | |  ||| |||||||||| |||||||||||||| |||| |||| ||||| || ||||||  ||    
17438846 tcttccctattcctcccatcccccaaattcctatagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttat 17438747  T
395 cccagctaaat 405  Q
    |||| ||||||    
17438746 cccaactaaat 17438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 31560827 - 31560717
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| ||||| ||||||| ||||| ||| |  ||| ||||| |||| |||||||| ||||| |||| |||| ||||| || ||||||  ||    
31560827 tcttccctattcctcccattccacaaattcctataacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaat 31560728  T
395 cccagctaaat 405  Q
    |||| ||||||    
31560727 cccaactaaat 31560717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 33306548 - 33306658
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| ||||| ||| ||| ||||| | | || |||  ||||||||| |||||||| ||||| |||| |||| ||||| || ||||||| ||    
33306548 tcttccctattcctcccattccagaaattcctatagcacaaacacaatcaaccgagtccaaaagcaaatgattttttaatgcttctataggagaatcaat 33306647  T
395 cccagctaaat 405  Q
    |||| ||||||    
33306648 cccaactaaat 33306658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 31567146 - 31567036
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| ||||| ||||||| ||||| | | |  ||| |||||| ||| |||||||| ||||| |||| |||  ||||| || ||||||| ||    
31567146 tcttccctattccccccattccacaaattcctatagcacgaacaccatcaatcgagtccaaaagcaaatgattttgtaacgcttctataggagaatcaat 31567047  T
395 cccagctaaat 405  Q
    |||| ||||||    
31567046 cccaactaaat 31567036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 33412015 - 33412125
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    |||| |||||||| ||||| ||||||| ||| | | | || ||| |||||||||| |||||||||||||| |||| |||| ||||| |  ||||||  ||    
33412015 tctttcctattccgcccattccacaaattccaatagcacaaacaccatcaaccgagtccaaaagtaaatgattttgtaatacttctatccgagaatttat 33412114  T
395 cccagctaaat 405  Q
    |||| ||||||    
33412115 cccaactaaat 33412125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 33642620 - 33642510
Alignment:
295 tcttccctattccacccatcccacaaactcctacaacccacacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccat 394  Q
    ||||||||||||| ||||| ||||||| ||||| | | |  ||| ||||||| || |||||||| ||||| |||| |||| ||| | || ||||||| ||    
33642620 tcttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaat 33642521  T
395 cccagctaaat 405  Q
    |||| ||||||    
33642520 cccaactaaat 33642510  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 33264460 - 33264516
Alignment:
43 ttgttcaacttgatcaacattgtcaagaattaaaagggactttacactacatagcct 99  Q
    ||||||||||||||| ||||| |||||||||| ||||| |||| ||| || ||||||    
33264460 ttgttcaacttgatccacattatcaagaattagaagggtcttttcacgacttagcct 33264516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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