View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_high_1 (Length: 492)
Name: NF4157_high_1
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Complemental strand, 32908502 - 32908037
Alignment:
| Q |
11 |
cagagacactgctatccacgtaaaagtagagtatgaacaagacaacattaggttcaatcaaatgtacaacaacacttacaatgctaacatgcatcaccag |
110 |
Q |
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| T |
32908502 |
cagagacactgctatccacgtaaaagtagagtatgaacaagacaacattaggttcaatcaaatgtacaacaacacttacaatgctaacatgcatcaccag |
32908403 |
T |
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| Q |
111 |
gttcatcatcaactcaatctcaagagagaaagtaaaaccaaaagtaatttgcaaatccaaacaaaaaatgtattattcattacatgcacatccaattaat |
210 |
Q |
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| T |
32908402 |
gttcatcaccaactcaatctcaagagagaaagtaaaaccaaaagtaatttgcaaatccaaacaaaaaatgtattattcattacatgcacatccaattaat |
32908303 |
T |
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| Q |
211 |
taattggcttaatatataacaaccgcatgtatatctgccaattttggtcgctaatttgacttcttnnnnnnnnnnnnnntccgcatgtatatggcatgaa |
310 |
Q |
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| T |
32908302 |
taattggcttaatatataacaaccgcatgtatatctgccaattttggtggctaatttgacttcttaaaaaaaaaaaaaatccgcatgtatatggcatgga |
32908203 |
T |
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| Q |
311 |
tttggctactttaatttcttaaaggaagaaactcaaaaaactggctggaggaagagttgatttcatgggtgtccatcatagaagcattaacacaaaacat |
410 |
Q |
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| T |
32908202 |
tttggctactttaatttcttaaaggaagaaactcaaaaaactggctggaggaagagttgatttcatgagtgtccatcatagaagcattaacacaaaacat |
32908103 |
T |
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| Q |
411 |
agattttctctcagaaattccatcttgtttatcctccttagctggaaaaagatcaagtgtcctagg |
476 |
Q |
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| T |
32908102 |
agattttctctcagaaattccatcttgtttatcctccttagctggaaaaagatcaagtgtcctagg |
32908037 |
T |
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