View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4157_high_4 (Length: 337)
Name: NF4157_high_4
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 10181635 - 10181931
Alignment:
| Q |
24 |
aaattggcctatcaagtgtatctcctctaacattcacaatatggttggaacattaacattttgatttccttcggcttcaaattacactttagcttataga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10181635 |
aaattggcctatcaagtgtatctcctctaacattcacaatatggttggaacattaacattttgacttccttcggcttcaaattacactttagcttataga |
10181734 |
T |
|
| Q |
124 |
attctcaagtg-aacaataacaattactccagcatcattcttaatattgatggtagttgtctcgactctcctattagaaccggctatgacggtgccttaa |
222 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
10181735 |
cttctcaagtggaacaataacaattactctagcatcattcttaatattgatggtagttgtctcgactctcttattagaaccggctatggtagtgtcttaa |
10181834 |
T |
|
| Q |
223 |
gaaataatggagggttttatttatcaggtttctctgtcgacatccaacatgtctctgacattcttcatgctgagttatttgttgtttacaagggcttgat |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10181835 |
gaaataatggagggttttatttatcagatttctctgtcgacatccaac----ctctgacattcttcatgctgagttatttgttgtttacaagggcctgat |
10181930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 31225300 - 31225183
Alignment:
| Q |
138 |
aataacaattactccagcatcattcttaatattgatggtagttgtctcgactctcctattagaaccggctatgacggtgccttaagaaataatggagggt |
237 |
Q |
| |
|
||||||||| ||| |||||||| ||||| ||||||||||||| |||| |||| |||||||| ||||||| ||||| |||||||||| | | | | |
|
|
| T |
31225300 |
aataacaataactttagcatcatccttaacgttgatggtagttgcctcggctctgctattagagttggctatggcggtgtcttaagaaatgaaacaagtt |
31225201 |
T |
|
| Q |
238 |
tttatttatcaggtttct |
255 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31225200 |
tttatttatcaggtttct |
31225183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 316
Target Start/End: Original strand, 13357111 - 13357293
Alignment:
| Q |
134 |
gaacaataacaattactccagcatcattcttaatattgatggtagttgtctcgactctcctattagaaccggctatgacggtgccttaagaaataatgga |
233 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| | |||||| ||| | |||||||||||||| |
|
|
| T |
13357111 |
gaacaataacaatcactccaacatcattcttaatgttgatgttagttgtctcggctctcctattagagcttgctatgtcggagtcttaagaaataatgtt |
13357210 |
T |
|
| Q |
234 |
gggttttatttatcaggtttctctgtcgacatccaacatgtctctgacattcttcatgctgagttatttgttgtttacaaggg |
316 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||| ||||||||| | ||| |||||| |
|
|
| T |
13357211 |
gggttttatttatcaggtttctcttactacatccaacatttgtctgacattcttcatgctaagttatttgctatttccaaggg |
13357293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 25665711 - 25665551
Alignment:
| Q |
156 |
atcattcttaatattgatggtagttgtctcgactctcctattagaaccggctatgacggtgccttaagaaataatggagggttttatttatcaggtttct |
255 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||||||||||||| | || ||| | ||| ||| |||||||||| ||||||||||||||||| ||| | |
|
|
| T |
25665711 |
atcattcttaatgttgttggtagttgtcttgactctcctattagagctggttatagcagtgtcttcagaaataatgcagggttttatttatcagattttt |
25665612 |
T |
|
| Q |
256 |
ctgtcgacatccaacatgtctctgacattcttcatgctgagttatttgttgtttacaaggg |
316 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25665611 |
tttattacatccaacattcatctgacattcttcatgctgagttatttgttatttacaaggg |
25665551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 38933296 - 38933245
Alignment:
| Q |
262 |
acatccaacatgtctctgacattcttcatgctgagttatttgttgtttacaa |
313 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
38933296 |
acatccaacattcctctgacattctttatgctgagttatttgctatttacaa |
38933245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University