View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_low_1 (Length: 502)
Name: NF4157_low_1
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 76 - 489
Target Start/End: Original strand, 14170018 - 14170442
Alignment:
| Q |
76 |
ttcttcggaacagggtgtttcttgaaagaatatgcatcttttaaggttagctttccattagaaatatgcttccaaatcagttgatcttcggtgtcatcaa |
175 |
Q |
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| T |
14170018 |
ttcttcggaacagggtgtttcttgaaagaatatgcatcttttaaggttagctttccattagaaacatgcttccaaatcagttgatcttcagtgtcatcaa |
14170117 |
T |
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| Q |
176 |
ctcacaactaactctagttgaaaaatggttacaagtagttagtttgttaactaacttcctccaaaagtaatctatgtactctcacttatcattacggttt |
275 |
Q |
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| T |
14170118 |
ctcacaactaactctagttgaaaaatggttacaagtagttagtttgttaactaacttcctccaaaagtaatctatatactctcacttatcattacggttt |
14170217 |
T |
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| Q |
276 |
aataatatctacaagtagtagatacattatgaaaatcaagcattaatttgaatttaannnnnnngcaatcatagtacaattttacacatatccaaatgat |
375 |
Q |
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| T |
14170218 |
aataatatctacaagtagtagatacattatgaaaatcaagcattaatttgaatttaatttttttgcaatcatagtacaattttgcacatatccaaatga- |
14170316 |
T |
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| Q |
376 |
ttttagaaaataacattataaaatttaaatgattaaatttgatcattgcatacaaattaaactacatt------------acatggcaactcaaagactt |
463 |
Q |
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| T |
14170317 |
ttttagaaaataacattataaaatttaaatgattaaatttgatcattgcataaaaattaaactacattatttattttctaacatggcaactcaaagactt |
14170416 |
T |
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| Q |
464 |
ctttcaccatcctccttgttccttct |
489 |
Q |
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| T |
14170417 |
ctttcacaatcctccttgttccttct |
14170442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 14174137 - 14174177
Alignment:
| Q |
447 |
tggcaactcaaagacttctttcaccatcctccttgttcctt |
487 |
Q |
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| T |
14174137 |
tggcaactcaaaggtttctttcacgatcctccttgttcctt |
14174177 |
T |
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