View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4157_low_15 (Length: 249)
Name: NF4157_low_15
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39608921 - 39609164
Alignment:
| Q |
1 |
aatttagtgtatttttggaatcatgaggagtttgacaccgtgggtttgttgaaacttcaaactgaaactttaaagtgtaactttagccaaaatcatggtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39608921 |
aatttagtgtatttttggaatcatgaggagtttgacaccgtgggtttgttgaaactttaaactgaaactttaaagtgtaactttagccaaaatcatggtg |
39609020 |
T |
|
| Q |
101 |
gctcaccatcattccatcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39609021 |
gctcaccatcattccatcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaattcaaacatgatttatagtctcgattttat |
39609120 |
T |
|
| Q |
201 |
tcaaacatagatcactttatagtcaatttaactgttcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39609121 |
tcaaacatagatcactttatagtcaatttaactgttcatttcac |
39609164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 39609469 - 39609553
Alignment:
| Q |
117 |
tcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttatt |
201 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39609469 |
tcaatccaaacatgtactaactctaacttgaaattttgatttggaatttttaaatccaaacatgatttatagtctcaattttatt |
39609553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University