View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_low_20 (Length: 238)
Name: NF4157_low_20
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 982884 - 982668
Alignment:
| Q |
5 |
cagtgatatatgtgattacattaaattagttaattttttgaatttattatcagtgtcaacgtgtaagtatcgtatacaatgtatatgtgtcagtgcttcg |
104 |
Q |
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| T |
982884 |
cagtgatatatgtgattacattaaattagttaattttttgaatttattatcagtgtcaacgtgtaagtatcgtgtacaatgtatatgtgtcggtgcttcg |
982785 |
T |
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| Q |
105 |
tagtttcttacacatccatgcacattgttaagtgttgtgtgacaaacaatttagttttattacttcatgtaggcatctgaatgcagcatgtaaagaagaa |
204 |
Q |
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| T |
982784 |
tagtttcttacacatccatgcacattgttaagtgttgtgtgacaaacaatttagttttattacttcatgtaggcatctgaatgcagcatataaagaagaa |
982685 |
T |
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| Q |
205 |
gggactaataatgcacc |
221 |
Q |
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| T |
982684 |
gggactaataatgcacc |
982668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 15969400 - 15969346
Alignment:
| Q |
14 |
atgtgattacattaaattagttaattttttgaatttattatcagtgtcaacgtgt |
68 |
Q |
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| T |
15969400 |
atgtgattacattaaattatgttattttttaaaattattatcagtgtcgacgtgt |
15969346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 53763634 - 53763582
Alignment:
| Q |
168 |
ttcatgtaggcatctgaatgcagcatgtaaagaagaagggactaataatgcac |
220 |
Q |
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| T |
53763634 |
ttcatgttggcatttgaatgctgcatgaaaagaagagggggctaataatgcac |
53763582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 44089279 - 44089230
Alignment:
| Q |
19 |
attacattaaattagttaattttttgaatttattatcagtgtcaacgtgt |
68 |
Q |
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| T |
44089279 |
attacattaaattatttaattgttttaaattattatcaatgtcaacgtgt |
44089230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31523721 - 31523765
Alignment:
| Q |
16 |
gtgattacattaaattagttaattttttgaatttattatcagtgt |
60 |
Q |
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| T |
31523721 |
gtgattacattcaattaattaattttttaaattttttatcagtgt |
31523765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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