View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4157_low_21 (Length: 237)

Name: NF4157_low_21
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4157_low_21
NF4157_low_21
[»] chr7 (2 HSPs)
chr7 (109-237)||(24773397-24773525)
chr7 (111-232)||(35350110-35350233)
[»] chr5 (4 HSPs)
chr5 (110-237)||(33826378-33826505)
chr5 (106-237)||(2416271-2416404)
chr5 (110-237)||(39878963-39879092)
chr5 (111-235)||(39348675-39348803)
[»] chr8 (3 HSPs)
chr8 (109-237)||(27018759-27018889)
chr8 (111-237)||(9061901-9062028)
chr8 (103-149)||(42758484-42758530)
[»] chr3 (3 HSPs)
chr3 (111-237)||(16652764-16652891)
chr3 (111-237)||(7604743-7604870)
chr3 (111-225)||(19011671-19011786)
[»] chr2 (1 HSPs)
chr2 (111-237)||(27313617-27313744)
[»] chr1 (5 HSPs)
chr1 (111-237)||(38443795-38443923)
chr1 (110-235)||(4014518-4014645)
chr1 (181-237)||(15197684-15197740)
chr1 (109-172)||(25882691-25882754)
chr1 (193-226)||(25880924-25880957)
[»] chr6 (4 HSPs)
chr6 (111-237)||(921127-921255)
chr6 (111-235)||(2277184-2277312)
chr6 (40-79)||(26455404-26455443)
chr6 (82-111)||(26455459-26455488)
[»] scaffold0531 (1 HSPs)
scaffold0531 (111-237)||(10948-11077)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 24773397 - 24773525
Alignment:
Q  109 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatttnnnnnnntgaacattacattatataatattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||| ||||    
T  24773397 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaatgaacattacattatataatattatctc 24773496  T
Q  209 tcattattatagatctctgtgaatagaat 237  Q
    |||||||||||||||||||||||||||||    
T  24773497 tcattattatagatctctgtgaatagaat 24773525  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 35350233 - 35350110
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||| |||||||||||||||||||    
T  35350233 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattgcattatataatattgtctc 35350134  T
Q  209 tcattattatagatctctgtgaat 232  Q
    ||||||||||| |||| |||||||    
T  35350133 tcattattataaatctttgtgaat 35350110  T

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Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 33826378 - 33826505
Alignment:
Q  110 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatttnnnnnnntgaacattacattatataatattgtctct 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||    
T  33826378 tactagattactaacccatgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaatgaacattacattatataatattgtctct 33826477  T
Q  210 cattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||||||||||||||    
T  33826478 cattattatagatctctgtgaatagaat 33826505  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 2416271 - 2416404
Alignment:
Q  106 taaatactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatatt 203  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||||||||||||||||||    
T  2416271 taaaaactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaattttaaaaaaaatgaacattacattatataatatt 2416370  T
Q  204 gtctctcattattatagatctctgtgaatagaat 237  Q
    |||||||||||||||||||||| |||| ||||||    
T  2416371 gtctctcattattatagatctccgtgagtagaat 2416404  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 39879092 - 39878963
Alignment:
Q  110 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt-nnnnnnntgaacattacattatataatattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||    
T  39879092 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacgatttcaaaaaaatgaacattacattatataatattgtctc 39878993  T
Q  209 tcattattatagatct-ctgtgaatagaat 237  Q
    |||||||||||||||| | |||||||||||    
T  39878992 tcattattatagatctcccgtgaatagaat 39878963  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 39348803 - 39348675
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt----nnnnnnntgaacattacattatataatattgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||||||| |||||||||||||||||    
T  39348803 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaaaatgaacattgcattatataatattgtc 39348704  T
Q  207 tctcattattatagatctctgtgaataga 235  Q
    ||||||||||||| |||||||||||||||    
T  39348703 tctcattattataaatctctgtgaataga 39348675  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 27018889 - 27018759
Alignment:
Q  109 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatattgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||    
T  27018889 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattacattatataatattgtc 27018790  T
Q  207 tctcattattatagatctctgtgaatagaat 237  Q
    |||||||||||||||||||| ||||||||||    
T  27018789 tctcattattatagatctctatgaatagaat 27018759  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 9062028 - 9061901
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt-nnnnnnntgaacattacattatataatattgtctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||||||| |||||    
T  9062028 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattatctct 9061929  T
Q  210 cattattatagatctctgtgaatagaat 237  Q
    |||||||||||||||| |||||||||||    
T  9061928 cattattatagatctccgtgaatagaat 9061901  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 42758484 - 42758530
Alignment:
Q  103 atataaatactagattactaacccgtgcgccgcacgggttttatgag 149  Q
    ||||| |||||||||| || |||||| ||||||||||||||||||||    
T  42758484 atatatatactagatttctgacccgtacgccgcacgggttttatgag 42758530  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 16652891 - 16652764
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatttnnnnnnn-tgaacattacattatataatattgtctct 209  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||    
T  16652891 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 16652792  T
Q  210 cattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||||||||||||||    
T  16652791 cattattatagatctctgtgaatagaat 16652764  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 7604743 - 7604870
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatttnnnnnnn-tgaacattacattatataatattgtctct 209  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||    
T  7604743 actagattactaacccgtgcgccgcacgaattttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 7604842  T
Q  210 cattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||||||||||||||    
T  7604843 cattattatagatctctgtgaatagaat 7604870  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 19011786 - 19011671
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt-nnnnnnntgaacattacattatataatattgtctct 209  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||    
T  19011786 actatattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 19011687  T
Q  210 cattattatagatctc 225  Q
    ||||||||||||||||    
T  19011686 cattattatagatctc 19011671  T

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Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 27313617 - 27313744
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt-nnnnnnntgaacattacattatataatattgtctct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||    
T  27313617 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaatgaacattacattatataatattgtctct 27313716  T
Q  210 cattattatagatctctgtgaatagaat 237  Q
    |||||||||||||||| |||||||||||    
T  27313717 cattattatagatctccgtgaatagaat 27313744  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 38443923 - 38443795
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||    
T  38443923 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattacattatataatattgtctc 38443824  T
Q  209 tcattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||| |||||||||||    
T  38443823 tcattattatagatctccgtgaatagaat 38443795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 4014645 - 4014518
Alignment:
Q  110 tactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatattgtct 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||         |||||||| ||||||||||||||||||    
T  4014645 tactagattactaacccgtgcgccgcacgggttttaagagatgaaaaacattcgttaacaatttaaaaaaaaatgaacattgcattatataatattgtct 4014546  T
Q  208 ctcattattatagatctctgtgaataga 235  Q
    |||||||||||| |||||||||||||||    
T  4014545 ctcattattataaatctctgtgaataga 4014518  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 15197684 - 15197740
Alignment:
Q  181 tgaacattacattatataatattgtctctcattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15197684 tgaacattacattatataatattgtctctcattattatagatctccgtgaatagaat 15197740  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 25882754 - 25882691
Alignment:
Q  109 atactagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatt 172  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||| ||||||||| ||||||||    
T  25882754 atactagattgctaacccgcacgccgcacgagttttatgagatgacaaacatttgctaacaatt 25882691  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 25880957 - 25880924
Alignment:
Q  193 tatataatattgtctctcattattatagatctct 226  Q
    ||||||||||||||||| ||||||||||||||||    
T  25880957 tatataatattgtctcttattattatagatctct 25880924  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 921255 - 921127
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt--nnnnnnntgaacattacattatataatattgtctc 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||    
T  921255 actagattactaacccgtgcgccgcacgagttttatgagatgaaaaacattcgttaacaattttaaaaaaaatgaacattacattatataatattgtctc 921156  T
Q  209 tcattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||| |||||||||||    
T  921155 tcattattatagatctccgtgaatagaat 921127  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 2277312 - 2277184
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaattt----nnnnnnntgaacattacattatataatattgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||           |||||||| |||||||||||||||||    
T  2277312 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacattcgttaacaatttaaaaaaaaaaatgaacattgcattatataatattgtc 2277213  T
Q  207 tctcattattatagatctctgtgaataga 235  Q
    ||||||||||||| |||||||||||||||    
T  2277212 tctcattattataaatctctgtgaataga 2277184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 26455404 - 26455443
Alignment:
Q  40 aagattttcatttatatatttacattctctctaagtacat 79  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  26455404 aagattttcatttatatatttacattgtccctaagtacat 26455443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 26455459 - 26455488
Alignment:
Q  82 taaaataaaatgcatgaaatgatataaata 111  Q
    ||||||||||||||||||||||||||||||    
T  26455459 taaaataaaatgcatgaaatgatataaata 26455488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 10948 - 11077
Alignment:
Q  111 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaacatttgttaacaatttnnnnnnnt---gaacattacattatataatattgtct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||           ||||||||||||||||||||||||||    
T  10948 actagattactaacccgtgcgccgcacgggttttatgagatgaaaaatattcgttaacaattttaaaaaaaatagaacattacattatataatattgtct 11047  T
Q  208 ctcattattatagatctctgtgaatagaat 237  Q
    ||||||||||||||||||||||||||||||    
T  11048 ctcattattatagatctctgtgaatagaat 11077  T

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