View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4157_low_23 (Length: 236)

Name: NF4157_low_23
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4157_low_23
NF4157_low_23
[»] chr5 (23 HSPs)
chr5 (1-62)||(2953269-2953330)
chr5 (1-62)||(19655237-19655298)
chr5 (1-62)||(16971223-16971284)
chr5 (1-62)||(29699446-29699507)
chr5 (1-51)||(19655156-19655206)
chr5 (1-62)||(291095-291156)
chr5 (1-62)||(3899918-3899979)
chr5 (1-58)||(12913801-12913858)
chr5 (2-62)||(28818996-28819056)
chr5 (1-59)||(291179-291237)
chr5 (1-63)||(2356350-2356411)
chr5 (1-62)||(2093935-2093996)
chr5 (1-58)||(11983254-11983310)
chr5 (1-50)||(19598330-19598379)
chr5 (21-62)||(29699385-29699426)
chr5 (2-59)||(30117827-30117884)
chr5 (6-62)||(12913882-12913938)
chr5 (1-62)||(16439136-16439197)
chr5 (21-62)||(17849224-17849265)
chr5 (2-50)||(19272265-19272313)
chr5 (2-50)||(22082997-22083045)
chr5 (21-53)||(29385393-29385425)
chr5 (2-38)||(39777050-39777086)
[»] chr4 (25 HSPs)
chr4 (1-62)||(6271781-6271842)
chr4 (1-62)||(51265443-51265504)
chr4 (2-62)||(23444348-23444408)
chr4 (2-62)||(47661921-47661981)
chr4 (5-62)||(3862625-3862682)
chr4 (5-62)||(3871382-3871439)
chr4 (1-62)||(6271700-6271761)
chr4 (1-62)||(42375089-42375150)
chr4 (2-62)||(23444268-23444328)
chr4 (1-53)||(30709988-30710040)
chr4 (2-52)||(44380019-44380069)
chr4 (1-62)||(26186093-26186154)
chr4 (1-62)||(30861853-30861914)
chr4 (1-62)||(44379928-44379989)
chr4 (1-62)||(51265524-51265585)
chr4 (1-53)||(35682164-35682216)
chr4 (6-62)||(53954689-53954745)
chr4 (17-51)||(30861796-30861830)
chr4 (21-62)||(47661860-47661901)
chr4 (6-62)||(35682245-35682301)
chr4 (2-52)||(47762607-47762657)
chr4 (29-62)||(50384131-50384164)
chr4 (29-62)||(52028628-52028661)
chr4 (27-59)||(40789203-40789235)
chr4 (29-61)||(53954636-53954668)
[»] chr3 (19 HSPs)
chr3 (1-62)||(41753043-41753104)
chr3 (1-62)||(1801444-1801505)
chr3 (1-51)||(41752962-41753012)
chr3 (1-53)||(30734490-30734542)
chr3 (2-62)||(43139788-43139848)
chr3 (2-62)||(47492126-47492186)
chr3 (1-51)||(51046163-51046213)
chr3 (1-62)||(45103107-45103168)
chr3 (21-62)||(47492065-47492106)
chr3 (7-62)||(30580835-30580890)
chr3 (1-52)||(50524791-50524842)
chr3 (1-58)||(30580754-30580811)
chr3 (1-62)||(33689174-33689235)
chr3 (29-62)||(30476500-30476533)
chr3 (1-62)||(30734400-30734461)
chr3 (29-62)||(33689255-33689288)
chr3 (1-53)||(7977588-7977640)
chr3 (9-53)||(18321657-18321701)
chr3 (2-58)||(21024094-21024149)
[»] chr1 (27 HSPs)
chr1 (2-62)||(44706863-44706923)
chr1 (1-62)||(29179676-29179737)
chr1 (1-62)||(37155044-37155105)
chr1 (1-62)||(48993915-48993976)
chr1 (2-62)||(28395636-28395696)
chr1 (1-51)||(46931995-46932045)
chr1 (1-62)||(32540827-32540888)
chr1 (1-62)||(48993996-48994057)
chr1 (2-62)||(15220890-15220950)
chr1 (1-62)||(5995448-5995509)
chr1 (1-62)||(9157308-9157369)
chr1 (1-62)||(21630040-21630101)
chr1 (1-62)||(29179595-29179656)
chr1 (1-58)||(36290490-36290547)
chr1 (10-62)||(32540755-32540807)
chr1 (1-59)||(1091626-1091684)
chr1 (1-51)||(46932072-46932121)
chr1 (1-62)||(5995367-5995428)
chr1 (1-62)||(49444911-49444972)
chr1 (1-53)||(12441043-12441095)
chr1 (1-53)||(31342261-31342313)
chr1 (1-53)||(36381590-36381642)
chr1 (21-62)||(17127582-17127623)
chr1 (21-62)||(29371447-29371488)
chr1 (1-62)||(33219652-33219713)
chr1 (1-46)||(48498413-48498458)
chr1 (29-62)||(48823911-48823944)
[»] chr2 (24 HSPs)
chr2 (1-63)||(32545866-32545928)
chr2 (1-62)||(6217222-6217283)
chr2 (1-62)||(29508770-29508831)
chr2 (1-62)||(14470590-14470651)
chr2 (1-62)||(16514503-16514564)
chr2 (1-62)||(38933666-38933727)
chr2 (1-47)||(16514422-16514468)
chr2 (5-62)||(9173060-9173117)
chr2 (5-62)||(14229355-14229412)
chr2 (1-62)||(37961785-37961846)
chr2 (7-62)||(33018624-33018679)
chr2 (1-59)||(6722033-6722091)
chr2 (202-236)||(26163800-26163834)
chr2 (1-62)||(24115999-24116060)
chr2 (5-49)||(29508692-29508736)
chr2 (1-53)||(30610264-30610315)
chr2 (1-52)||(24115918-24115969)
chr2 (2-52)||(14892349-14892399)
chr2 (29-62)||(2828663-2828696)
chr2 (103-140)||(26052938-26052975)
chr2 (22-62)||(6721970-6722010)
chr2 (30-62)||(15011359-15011391)
chr2 (30-62)||(37762028-37762060)
chr2 (21-53)||(39819081-39819113)
[»] chr8 (19 HSPs)
chr8 (1-62)||(2581823-2581884)
chr8 (1-62)||(5033240-5033301)
chr8 (1-62)||(22649843-22649904)
chr8 (1-62)||(35441048-35441109)
chr8 (1-62)||(5033159-5033220)
chr8 (1-62)||(5667095-5667156)
chr8 (1-62)||(33841589-33841650)
chr8 (1-62)||(35440967-35441028)
chr8 (1-53)||(10086755-10086807)
chr8 (1-62)||(8243467-8243528)
chr8 (1-62)||(33841670-33841731)
chr8 (1-53)||(1880237-1880288)
chr8 (7-59)||(10086839-10086891)
chr8 (1-62)||(5667176-5667237)
chr8 (1-50)||(39851046-39851095)
chr8 (2-62)||(43844548-43844608)
chr8 (1-62)||(8796420-8796481)
chr8 (1-53)||(4958598-4958649)
chr8 (26-58)||(37618750-37618782)
[»] chr7 (19 HSPs)
chr7 (1-62)||(11016867-11016928)
chr7 (1-62)||(42628374-42628435)
chr7 (1-62)||(45231929-45231990)
chr7 (1-59)||(11016951-11017009)
chr7 (1-63)||(41018306-41018368)
chr7 (1-58)||(4290628-4290685)
chr7 (5-62)||(27028730-27028787)
chr7 (1-51)||(34854785-34854835)
chr7 (1-62)||(38975803-38975864)
chr7 (1-51)||(48000827-48000877)
chr7 (1-62)||(41945934-41945995)
chr7 (1-62)||(48000692-48000753)
chr7 (1-61)||(4290543-4290603)
chr7 (22-62)||(15027621-15027661)
chr7 (21-59)||(22764782-22764820)
chr7 (5-59)||(27028875-27028929)
chr7 (7-53)||(41945859-41945905)
chr7 (1-50)||(15027540-15027589)
chr7 (29-62)||(41018254-41018287)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-62)||(7126-7186)
scaffold0586 (6-62)||(7050-7106)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-62)||(49701-49762)
[»] chr6 (11 HSPs)
chr6 (2-62)||(551244-551304)
chr6 (2-62)||(13043536-13043596)
chr6 (9-62)||(12343179-12343232)
chr6 (5-62)||(24587463-24587520)
chr6 (1-62)||(24975750-24975811)
chr6 (1-59)||(17750901-17750958)
chr6 (1-63)||(24618599-24618661)
chr6 (1-62)||(17750981-17751042)
chr6 (27-63)||(10521873-10521909)
chr6 (2-40)||(13043447-13043485)
chr6 (29-62)||(31654331-31654364)
[»] scaffold0161 (2 HSPs)
scaffold0161 (1-62)||(27299-27360)
scaffold0161 (1-53)||(27218-27270)
[»] scaffold0047 (1 HSPs)
scaffold0047 (29-62)||(63836-63869)
[»] scaffold0180 (1 HSPs)
scaffold0180 (6-62)||(19125-19181)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2953330 - 2953269
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  2953330 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgctt 2953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19655298 - 19655237
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  19655298 cttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgctt 19655237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16971284 - 16971223
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  16971284 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 16971223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29699507 - 29699446
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||    
T  29699507 cttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgctt 29699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19655156 - 19655206
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19655156 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 19655206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 291095 - 291156
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  291095 cttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 291156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3899979 - 3899918
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| |||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  3899979 cttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 3899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12913801 - 12913858
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    |||| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||    
T  12913801 cttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaat 12913858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 28819056 - 28818996
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| |||||||| |||||||||||||| |||||| |||||| ||||||||    
T  28819056 ttgggtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgctt 28818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 291237 - 291179
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||| ||||| ||| ||||||||||||||||||  ||||||||||||| |||||    
T  291237 cttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2356411 - 2356350
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctta 63  Q
    |||| |||||||||| |||  |||||||||||||||||||||||||| ||||| |||||||||    
T  2356411 cttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgctta 2356350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2093935 - 2093996
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||| |||||||||||||  |||||||||||||  |||||||    
T  2093935 cttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgctt 2093996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11983254 - 11983310
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||| |||||| ||||    
T  11983254 cttgggtgacatagaattg-gtgatattggtgacattggtcaatcaaaatgtcacaat 11983310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19598330 - 19598379
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaat 50  Q
    ||||||||||||||| ||| || |||||||||||||||| ||||||||||    
T  19598330 cttgggtgacatagagttgggtaacattggtgacattggtcaatcacaat 19598379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 29699385 - 29699426
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  29699385 gtgacattggtgacattggccaatcacaatgccacaatgctt 29699426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 30117827 - 30117884
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    |||||||| ||||| ||| ||||||||||||| |||| |||||||||||||| |||||    
T  30117827 ttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatg 30117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12913938 - 12913882
Alignment:
Q  6 gtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| ||| ||||||||||||| ||||| |||||||||||||  |||||||    
T  12913938 gtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgctt 12913882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16439136 - 16439197
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||| ||| ||||| ||| || | |||||||||||||| ||||||||||||| ||||||||    
T  16439136 cttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgctt 16439197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 17849265 - 17849224
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||||||| |||||||||| |||||||||||    
T  17849265 gtgatattggtgacattggtcaatcacaatatcgcaatgctt 17849224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 19272265 - 19272313
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaat 50  Q
    |||| ||||||||| |||||||| |||||||| |||| |||||||||||    
T  19272265 ttggatgacatagagttgagtgatattggtgaaattgaccaatcacaat 19272313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 22082997 - 22083045
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaat 50  Q
    |||||||||||||| ||| ||||||||  |||||||| |||||||||||    
T  22082997 ttgggtgacatagagttgtgtgacattaatgacattgaccaatcacaat 22083045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 29385425 - 29385393
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||||||| |||||||||    
T  29385425 gtgacattggtgacattggccaaccacaatgtc 29385393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 39777050 - 39777086
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattg 38  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggtgacattg 39777086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6271842 - 6271781
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  6271842 cttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgctt 6271781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51265443 - 51265504
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  51265443 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 51265504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 23444408 - 23444348
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  23444408 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 23444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 47661981 - 47661921
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  47661981 ttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 47661921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3862682 - 3862625
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  3862682 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 3862625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3871439 - 3871382
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  3871439 ggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 3871382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6271700 - 6271761
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||| | ||||||||    
T  6271700 cttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgctt 6271761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42375150 - 42375089
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||||||||||| ||||||||    
T  42375150 cttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgctt 42375089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 23444268 - 23444328
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||| ||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  23444268 ttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 23444328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30710040 - 30709988
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  30710040 cttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtc 30709988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 44380069 - 44380019
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgt 52  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  44380069 ttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatgt 44380019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26186154 - 26186093
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| || |||||| |||||||||||||||||||| || ||||||||    
T  26186154 cttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgctt 26186093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30861914 - 30861853
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||  ||| |||||||||||||||||||||||||| | ||||||||    
T  30861914 cttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgctt 30861853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44379928 - 44379989
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||| | |||||| ||||||||    
T  44379928 cttggatgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgctt 44379989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 51265585 - 51265524
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| |||| ||| |||||||||||||||||| ||||||| |||||| ||||||||    
T  51265585 cttgggtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgctt 51265524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35682164 - 35682216
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||||||||||||    
T  35682164 cttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtc 35682216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 53954745 - 53954689
Alignment:
Q  6 gtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| ||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgctt 53954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 30861796 - 30861830
Alignment:
Q  17 ttgagtgacattggtgacattggccaatcacaatg 51  Q
    |||||||||||||||||||||||||||||||||||    
T  30861796 ttgagtgacattggtgacattggccaatcacaatg 30861830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 47661860 - 47661901
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  47661860 gtgacattggtgacattggccaatcacaatgccacaatgctt 47661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 35682301 - 35682245
Alignment:
Q  6 gtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| ||  |||||||||||||||||| || ||||||||||| ||||||||    
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgctt 35682245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 47762607 - 47762657
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgt 52  Q
    ||||||||||||||  ||||||| ||| ||||||||| |||||||||||||    
T  47762607 ttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgt 47762657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 50384131 - 50384164
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  50384131 ggtgacattggccaatcacaatgtcacaatgctt 50384164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 52028661 - 52028628
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  52028661 ggtgacattggccaatcacaatgtcacaatgctt 52028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 40789203 - 40789235
Alignment:
Q  27 ttggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||||||||||||||||||| |||||    
T  40789203 ttggtgacattggccaatcacaatgtcacaatg 40789235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 53954636 - 53954668
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgct 61  Q
    ||||||||||||||||||||||||| |||||||    
T  53954636 ggtgacattggccaatcacaatgtcacaatgct 53954668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41753104 - 41753043
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||    
T  41753104 cttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgctt 41753043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1801444 - 1801505
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  1801444 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 1801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41752962 - 41753012
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  41752962 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 41753012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30734542 - 30734490
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  30734542 cttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtc 30734490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 43139848 - 43139788
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||||| |||||| | ||||||||    
T  43139848 ttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgctt 43139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 47492186 - 47492126
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  47492186 ttgggtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgctt 47492126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51046213 - 51046163
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  51046213 cttgggtgacatagagttggatgacattggtgacattggccaatcacaatg 51046163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45103107 - 45103168
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||| ||||  ||||||||||||| ||||||||    
T  45103107 cttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgctt 45103168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 47492065 - 47492106
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  47492065 gtgacattggtgacattggccaatcacaatgtcacaatgctt 47492106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 30580890 - 30580835
Alignment:
Q  7 tgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||| || |||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgctt 30580835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50524842 - 50524791
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgt 52  Q
    ||||||||||||||| ||||||||||||||||| ||| | ||||||||||||    
T  50524842 cttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgt 50524791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30580754 - 30580811
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    |||| |||||||||||||| ||||||||||||| |||| ||||||| |||||| ||||    
T  30580754 cttgagtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaat 30580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33689174 - 33689235
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| ||||||||| ||| ||||| ||||||||||||| ||||||||    
T  33689174 cttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgctt 33689235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 30476500 - 30476533
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  30476500 ggtgacattggccaatcacaatgtcacaatgctt 30476533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30734400 - 30734461
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||  ||||||||| |||||||| || ||||||||||| ||||||||    
T  30734400 cttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgctt 30734461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 33689288 - 33689255
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  33689288 ggtgacattggccaatcacaatgtcacaatgctt 33689255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7977640 - 7977588
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||   |||||||| ||| ||||||||| |||||||||    
T  7977640 cttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgtc 7977588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 18321657 - 18321701
Alignment:
Q  9 acatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||| ||| |||| |||||||||||||| |||||||||||||    
T  18321657 acatagagttgggtgatattggtgacattggtcaatcacaatgtc 18321701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 21024094 - 21024149
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    |||||||||||| |||||| ||| |||||||||||||| ||| ||||||||| ||||    
T  21024094 ttgggtgacataaaattga-tgatattggtgacattggtcaaacacaatgtcacaat 21024149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 44706923 - 44706863
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  44706923 ttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgctt 44706863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29179737 - 29179676
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  29179737 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 29179676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37155044 - 37155105
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||    
T  37155044 cttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgctt 37155105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48993915 - 48993976
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  48993915 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 48993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 28395636 - 28395696
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  28395636 ttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgctt 28395696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46931995 - 46932045
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  46931995 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 46932045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32540888 - 32540827
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||||    
T  32540888 cttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgctt 32540827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48994057 - 48993996
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| | ||||||||    
T  48994057 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgctt 48993996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 15220950 - 15220890
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||| || ||||||||    
T  15220950 ttgggtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgctt 15220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5995509 - 5995448
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||  ||||||||||||||||| |||||||||||| | ||||||||    
T  5995509 cttgggtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgctt 5995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9157308 - 9157369
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| ||||||||||| |||||| |||||||||||||| ||||||||    
T  9157308 cttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgctt 9157369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21630040 - 21630101
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  21630040 cttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 21630101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29179595 - 29179656
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||| ||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||    
T  29179595 cttggatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgctt 29179656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36290547 - 36290490
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    ||||||||||||||| ||| |||||||||||| ||||| |||||||||||||| ||||    
T  36290547 cttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaat 36290490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 32540755 - 32540807
Alignment:
Q  10 catagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||| ||| |||||||||||| |||||||||||||||||||| ||||||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgctt 32540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1091684 - 1091626
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||||||| ||| |||| ||||||||| ||| |||||||||||||| |||||    
T  1091684 cttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatg 1091626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46932121 - 46932072
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  46932121 cttgggtgacatagagttg-gtgacattggtgacattgaccaatcacaatg 46932072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5995367 - 5995428
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||   |||||||||| ||||||||||||||||||| | ||||||||    
T  5995367 cttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgctt 5995428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49444911 - 49444972
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||| |  ||||||||||||  ||||||||    
T  49444911 cttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgctt 49444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12441095 - 12441043
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||| ||||||||||||  |||||||||||| ||||||| ||||||||||||    
T  12441095 cttggatgacatagaatttggtgacattggtggcattggctaatcacaatgtc 12441043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31342261 - 31342313
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||| ||| ||||||  | |||||||||||||||||||||||    
T  31342261 cttgggtgacatagagttgggtgacaccgatgacattggccaatcacaatgtc 31342313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36381590 - 36381642
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||| ||||||||||||   ||| ||||||||||||||||||||||||||||    
T  36381590 cttggatgacatagaattcgatgatattggtgacattggccaatcacaatgtc 36381642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17127582 - 17127623
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||| ||||||||| |||||||||||||| ||||||||    
T  17127582 gtgacattagtgacattgaccaatcacaatgtcacaatgctt 17127623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 29371488 - 29371447
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||| |||| |||||||||||||| ||||||||    
T  29371488 gtgacattggtgatattgaccaatcacaatgtcacaatgctt 29371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33219713 - 33219652
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||| ||||||| |||  |||||||||||||||||  |||||||||||||  |||||||    
T  33219713 cttgggtaacatagagttggatgacattggtgacattgatcaatcacaatgtcataatgctt 33219652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48498413 - 48498458
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatca 46  Q
    ||||||||||||||| ||| |||||||| |||||||||| ||||||    
T  48498413 cttgggtgacatagagttgggtgacatttgtgacattggtcaatca 48498458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 48823911 - 48823944
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  48823911 ggtgacattggccaatcacaatgtcacaatgctt 48823944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32545928 - 32545866
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctta 63  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||    
T  32545928 cttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgctta 32545866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6217222 - 6217283
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 6217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29508831 - 29508770
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||    
T  29508831 cttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgctt 29508770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 14470590 - 14470651
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||    
T  14470590 cttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgctt 14470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16514564 - 16514503
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||| ||||||||||||| |||||||||||||| ||||||||    
T  16514564 cttgggtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgctt 16514503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38933727 - 38933666
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||||| |||||| ||||||||    
T  38933727 cttgggtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgctt 38933666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16514422 - 16514468
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcac 47  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  16514422 cttgggtgacatagagttgggtgacattggtgacattggccaatcac 16514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 9173117 - 9173060
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  9173117 ggtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgctt 9173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14229355 - 14229412
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||| ||||||||    
T  14229355 ggtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgctt 14229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37961846 - 37961785
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||||||| ||| ||||||||| |||||||||||| | ||||||||    
T  37961846 cttgggtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgctt 37961785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 33018679 - 33018624
Alignment:
Q  7 tgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||| ||| ||||||||||||| ||||| ||||||||||||| ||||||||    
T  33018679 tgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgctt 33018624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6722091 - 6722033
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||||||| |||  ||||||| |||| ||||||||||||||||||| |||||    
T  6722091 cttgggtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatg 6722033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 26163800 - 26163834
Alignment:
Q  202 gaacacaattcacacattataaaaaatggttaata 236  Q
    |||||||||||||||||||||||||||||||||||    
T  26163800 gaacacaattcacacattataaaaaatggttaata 26163834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24116060 - 24115999
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| ||| |||| |||| ||||| ||||||||||||||||||||||    
T  24116060 cttgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgctt 24115999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 29508692 - 29508736
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaa 49  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||    
T  29508692 ggtgacatagagttgggtgacattggtgacattgaccaatcacaa 29508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30610315 - 30610264
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| || ||||||    
T  30610315 cttgggtgacatagaattg-gtggcattggtgacattggccaaccataatgtc 30610264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24115918 - 24115969
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgt 52  Q
    |||| |||| ||||| |||||| |||||||| ||||||||||||||||||||    
T  24115918 cttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgt 24115969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 14892399 - 14892349
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgt 52  Q
    |||||||||||||| |||  |||||||||||||||||  ||||||||||||    
T  14892399 ttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgt 14892349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 2828696 - 2828663
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  2828696 ggtgacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 26052975 - 26052938
Alignment:
Q  103 gcagttcatttccctaaaataatccatcaatacctgtt 140  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  26052975 gcagttcgtttccctaaaataatccatccatacctgtt 26052938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 6721970 - 6722010
Alignment:
Q  22 tgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||| ||||||||||| || ||||||||    
T  6721970 tgacattggtgacattgaccaatcacaatatcacaatgctt 6722010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 15011391 - 15011359
Alignment:
Q  30 gtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||||||||||||| ||||||||    
T  15011391 gtgacattggccaatcacaatgtcacaatgctt 15011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 37762028 - 37762060
Alignment:
Q  30 gtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||| |||||||||||||||||||||||    
T  37762028 gtgacattgaccaatcacaatgtcgcaatgctt 37762060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 39819081 - 39819113
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||||||| |||||||||    
T  39819081 gtgacattggtgacattggccaaccacaatgtc 39819113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2581823 - 2581884
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||||    
T  2581823 cttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgctt 2581884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5033301 - 5033240
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  5033301 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 5033240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22649843 - 22649904
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||    
T  22649843 cttgggtgacatagagttgagtgacattggtgacattggctaatcacaatgccacaatgctt 22649904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35441109 - 35441048
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  35441109 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 35441048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5033159 - 5033220
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| | ||||||||    
T  5033159 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgctt 5033220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5667095 - 5667156
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||  |||||||||||||||||| ||||||||||||| ||||||||    
T  5667095 cttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgctt 5667156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33841589 - 33841650
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||| |||| ||||||||    
T  33841589 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgctt 33841650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35440967 - 35441028
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| |||| ||| |||||||||||||||||| |||||||||||||| ||||||||    
T  35440967 cttgggtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgctt 35441028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10086755 - 10086807
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  10086755 cttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtc 10086807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8243528 - 8243467
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||| |||| ||||||||||| | ||||||||    
T  8243528 cttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgctt 8243467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33841731 - 33841670
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||| |||| | ||||||||    
T  33841731 cttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgctt 33841670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1880237 - 1880288
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  1880237 cttgggtgacatagaattg-gtgacactggtgacattgaccaatcacaatgtc 1880288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 10086891 - 10086839
Alignment:
Q  7 tgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||| |||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 10086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5667237 - 5667176
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||||||  |||||||    
T  5667237 cttgggtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgctt 5667176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39851095 - 39851046
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaat 50  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||||    
T  39851095 cttggatgacataaagttgagtgacattggtgacattgaccaatcacaat 39851046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 43844608 - 43844548
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| |||  |||||||||||| ||||  ||||||||||||| ||||||||    
T  43844608 ttgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgctt 43844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8796420 - 8796481
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||  |||| ||| |||| ||||| ||||||||||||| ||||||||    
T  8796420 cttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgctt 8796481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4958598 - 4958649
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    |||| |||||||||||||  |||| |||| |||||||||||||||||||||||    
T  4958598 cttgtgtgacatagaattt-gtgatattgatgacattggccaatcacaatgtc 4958649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 37618750 - 37618782
Alignment:
Q  26 attggtgacattggccaatcacaatgtcgcaat 58  Q
    |||||||||||||||||||||||||||| ||||    
T  37618750 attggtgacattggccaatcacaatgtcacaat 37618782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11016867 - 11016928
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||    
T  11016867 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgctt 11016928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42628435 - 42628374
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  42628435 cttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgctt 42628374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45231990 - 45231929
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  45231990 cttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgctt 45231929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11017009 - 11016951
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||| |||||    
T  11017009 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 11016951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41018368 - 41018306
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctta 63  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||    
T  41018368 cttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgctta 41018306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4290685 - 4290628
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaat 58  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||    
T  4290685 cttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 27028730 - 27028787
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  27028730 ggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgctt 27028787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34854835 - 34854785
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  34854835 cttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatg 34854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38975803 - 38975864
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||||||| | ||||||||    
T  38975803 cttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgctt 38975864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48000877 - 48000827
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatg 51  Q
    ||||||| ||||||| ||| |||||||||||||||||| ||||||||||||    
T  48000877 cttgggtcacatagagttgggtgacattggtgacattgaccaatcacaatg 48000827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41945995 - 41945934
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||| | ||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  41945995 cttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgctt 41945934  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48000692 - 48000753
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||| || ||| ||||||||||||||||||  ||||||||||| | ||||||||    
T  48000692 cttgggtgacattgagttgggtgacattggtgacattgatcaatcacaatgccacaatgctt 48000753  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4290543 - 4290603
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgct 61  Q
    ||||||||||||||| ||| |||| |||||||| ||||| ||||||||||| | |||||||    
T  4290543 cttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgct 4290603  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15027661 - 15027621
Alignment:
Q  22 tgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgctt 15027621  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 22764820 - 22764782
Alignment:
Q  21 gtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatg 22764782  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 27028929 - 27028875
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    ||||||||||| ||| ||||  ||||||||||||| ||||||||||||| |||||    
T  27028929 ggtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatg 27028875  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 41945859 - 41945905
Alignment:
Q  7 tgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||||||||||| ||||||| | |||||| ||||||    
T  41945859 tgacatagaattgagtgacattgatgacattagtcaatcataatgtc 41945905  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15027540 - 15027589
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaat 50  Q
    ||||||| ||||||| |||  ||||||||||||||||| |||||||||||    
T  15027540 cttgggtaacatagagttgtttgacattggtgacattgaccaatcacaat 15027589  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 41018254 - 41018287
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  41018254 ggtgacattggccaatcacaatgtcccaatgctt 41018287  T

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Target: scaffold0586 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7186 - 7126
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  7186 cttgtgtgacatagagttg-gtgacattggtgacattggccaatcacaatgtcacaatgctt 7126  T

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Target: scaffold0586; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 7050 - 7106
Alignment:
Q  6 gtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| ||| ||||||||||||| ||| ||||||||||||||| ||||||||    
T  7050 gtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgctt 7106  T

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Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49701 - 49762
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| ||| ||||||||| |||||||| |||||||||||||| ||||||||    
T  49701 cttgggtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgctt 49762  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 551304 - 551244
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||| | ||||||||    
T  551304 ttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgctt 551244  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 13043596 - 13043536
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||||||| || ||||||||    
T  13043596 ttgggtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgctt 13043536  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 12343232 - 12343179
Alignment:
Q  9 acatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgctt 12343179  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 24587463 - 24587520
Alignment:
Q  5 ggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||| ||| |||||||| |||||||||| ||||||||||||| ||||||||    
T  24587463 ggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgctt 24587520  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24975750 - 24975811
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||| |||  |||||||||||||||||| ||||||||||| | ||||||||    
T  24975750 cttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgctt 24975811  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17750901 - 17750958
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatg 59  Q
    |||| |||||||||| |||| |||||||||||||||||| ||||||||||||| |||||    
T  17750901 cttgtgtgacatagagttga-tgacattggtgacattggtcaatcacaatgtcacaatg 17750958  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24618599 - 24618661
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctta 63  Q
    |||| |||||||||| ||| ||||||||||||||||||  |||||||||||||  ||||||||    
T  24618599 cttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgctta 24618661  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17751042 - 17750981
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||| |||||||||| ||| |||| |||| ||||||||||| ||||||||||| ||||||||    
T  17751042 cttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgctt 17750981  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 10521873 - 10521909
Alignment:
Q  27 ttggtgacattggccaatcacaatgtcgcaatgctta 63  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10521873 ttggtgacattggccaatcacaatgtcacaatgctta 10521909  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 13043447 - 13043485
Alignment:
Q  2 ttgggtgacatagaattgagtgacattggtgacattggc 40  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  13043447 ttgggtgacatagaattgggtgacattggtgatattggc 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 31654331 - 31654364
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  31654331 ggtgacattggccaatcacaatgtcacaatgctt 31654364  T

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Target: scaffold0161 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27360 - 27299
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  27360 cttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgctt 27299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27218 - 27270
Alignment:
Q  1 cttgggtgacatagaattgagtgacattggtgacattggccaatcacaatgtc 53  Q
    ||||||||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  27218 cttgggtgacatagagttgggtgacattagtgatattggccaatcacaatgtc 27270  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 63869 - 63836
Alignment:
Q  29 ggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    ||||||||||||||||||||||||| ||||||||    
T  63869 ggtgacattggccaatcacaatgtcacaatgctt 63836  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 19125 - 19181
Alignment:
Q  6 gtgacatagaattgagtgacattggtgacattggccaatcacaatgtcgcaatgctt 62  Q
    |||||||||| ||| ||||||||| ||| ||||  ||||||||||||| ||||||||    
T  19125 gtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgctt 19181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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