View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_low_4 (Length: 349)
Name: NF4157_low_4
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 15835971 - 15835648
Alignment:
| Q |
19 |
acaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgattt |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835971 |
acaacttcaattctctggcaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgattt |
15835872 |
T |
|
| Q |
119 |
cttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835871 |
cttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgt |
15835772 |
T |
|
| Q |
219 |
aacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctacca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835771 |
aacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctacca |
15835672 |
T |
|
| Q |
319 |
atgtttcttcattcgctgcctttg |
342 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15835671 |
atgtttcttcattcgctgcctttg |
15835648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 19796732 - 19796410
Alignment:
| Q |
20 |
caacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgatttc |
119 |
Q |
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||||||||||||||| || ||||||||||||| ||||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||| |
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| T |
19796732 |
caacttcaattctcttggtagaaaccgaaacccaccgatggggttgacagagaacatgtcaccaacgtttctctccaccggtaacccttgcctcgatttc |
19796633 |
T |
|
| Q |
120 |
ttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgta |
219 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| || |||||||||||||| || |||||||| ||||| |||||| |||||||||||||||||| |
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| T |
19796632 |
ttcttccatgttgttcctgatactccttctgaaacactcgttgagagactcaaacttgcttggtcccaaaaccctctcaccgccctcaaactcgtctgta |
19796533 |
T |
|
| Q |
220 |
acctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaa |
319 |
Q |
| |
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|||||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19796532 |
acctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaa |
19796433 |
T |
|
| Q |
320 |
tgtttcttcattcgctgcctttg |
342 |
Q |
| |
|
|||| |||| |||||| ||||| |
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|
| T |
19796432 |
tgttccttctctcgctgactttg |
19796410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 72 - 314
Target Start/End: Complemental strand, 47713732 - 47713490
Alignment:
| Q |
72 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactca |
171 |
Q |
| |
|
||||||||||| |||| |||| | || || |||||||| ||||| ||||||||||||||||||||||| |||||| ||||||| || || |||| |
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| T |
47713732 |
aacatgtcaccaacatatctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttc |
47713633 |
T |
|
| Q |
172 |
aactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgc |
271 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| || ||||| |||||||| |
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| T |
47713632 |
aattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgc |
47713533 |
T |
|
| Q |
272 |
tgctgctctctggttgcatgaaaatcaccctaaaaccctagct |
314 |
Q |
| |
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|||||||| ||||| || | | |||||||||||||||||| |
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| T |
47713532 |
cgctgctctttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
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