View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_low_7 (Length: 318)
Name: NF4157_low_7
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 964937 - 965234
Alignment:
| Q |
8 |
aagcaaagggaggtggaatatagagagggatgagaga--tagagataatgttttgagtagaaaataaaagagtatattggtattataagttgacgaacaa |
105 |
Q |
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| T |
964937 |
aagcagagggaggtggaatatagagagggatgagagaggtagagataatgttttgagtagaaaataaaagagtatattggtattataagttgacgaacaa |
965036 |
T |
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| Q |
106 |
aaagtatccagtctcatgtttccttcatgaatagttttaaaatcaaataagtaaattttataattcggtgtgcaattcataaactggttgcaataaaatt |
205 |
Q |
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| T |
965037 |
aaagtatctagtctcatgtttccttcatgaatagttttaaaatcaaataagtaaattttataattcagtgtacaattcataaactggttgtaataaaact |
965136 |
T |
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| Q |
206 |
tattatttaaattgagaatgaagtatgaagattgaaatgtcactatttgctgcaaatgagatatatctccaacaattaattgtgttgtcggtaacact |
303 |
Q |
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| T |
965137 |
tattatttaaattgacaatgaagtatgaagattgaaatgtcactatttgctgcaaatgagatatatctccaacaattaattgtgttgtcggtaacact |
965234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 946213 - 946353
Alignment:
| Q |
163 |
ttataattcggtgtgcaattcataaactggttgcaataaaatttattatttaaattgagaatgaagtatgaagattgaaatgtcactatttgctgcaaat |
262 |
Q |
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| T |
946213 |
ttataattcggtgtgcaattcataaactggttgtaataaaattcattatttaatttgagaatgaagtatgaagattgatatgtcactatttgctgtaaat |
946312 |
T |
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| Q |
263 |
gagatatatctccaacaattaattgtgttgtcggtaacact |
303 |
Q |
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| T |
946313 |
aaaatatatctccaacaattaattgcgttgtcggtaacact |
946353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 303
Target Start/End: Original strand, 957765 - 957904
Alignment:
| Q |
164 |
tataattcggtgtgcaattcataaactggttgcaataaaatttattatttaaattgagaatgaagtatgaagattgaaatgtcactatttgctgcaaatg |
263 |
Q |
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|||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||| |
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| T |
957765 |
tataattccatgtgcaattcataaattggttgtaataaaattcattatttaaattgagaatgatgtaagaagagtgaaatgtcactatttgatgcaaatg |
957864 |
T |
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| Q |
264 |
agatatatctccaacaattaattgtgttgtcggtaacact |
303 |
Q |
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| T |
957865 |
agatatctctccaacaattaattgcgctgtcggtaacact |
957904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 946026 - 946144
Alignment:
| Q |
50 |
ataatgttttgagtagaaaataaaagagtatattggtattataagttgacgaacaaaaagtatccagtctcatgtttccttcatgaatagttttaaaatc |
149 |
Q |
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| T |
946026 |
ataaggttttgagtagaaaataaaagagtattctggtattataagttgattgacaaaaagtatatagtctcttgtttccctcaagaatagttttaaaatt |
946125 |
T |
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| Q |
150 |
aaataagtaaattttataa |
168 |
Q |
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| T |
946126 |
aaataagtaaattttataa |
946144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 957441 - 957535
Alignment:
| Q |
66 |
aaaataaaagagtatattggtattataagttgacgaacaaaaagtatccagtctcatgtttccttcatgaatagttttaaaatcaaataagtaaa |
160 |
Q |
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|||||||||||| || |||||||||||||||| |||||||||||| |||||| ||||||| ||||||| | |||||| | |||| ||||||| |
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| T |
957441 |
aaaataaaagagaattttggtattataagttggttgacaaaaagtatctagtctcttgtttccctcatgaacaattttaagaacaaacaagtaaa |
957535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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