View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4157_low_9 (Length: 292)
Name: NF4157_low_9
Description: NF4157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4157_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 24291420 - 24291158
Alignment:
| Q |
18 |
cttgcaacattggggccaattccagtccaaagagctccgattccttcctgtttgtttgatacagattaacaaaacttattagtacgagtttagagccnnn |
117 |
Q |
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| T |
24291420 |
cttgcaacattggggccaattccagtccaaagagctccgattccttcctgtttgtttgatacagattaacaaaacttattagtacgagtttagagccaaa |
24291321 |
T |
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| Q |
118 |
nnnn-tgacttaccacatcttatctttcaaaaaccatagaaggttaaagaagtatacctgtctcataattgttgaatatgcattcaacgatccagtgtat |
216 |
Q |
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| T |
24291320 |
aaaaatgacttaccacatcttatctttcaaaaaccatagaaggttaaagaagtatacctgtctcataattgttgaatatgcattcaacgatccagtgtat |
24291221 |
T |
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| Q |
217 |
cgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaactttgacaagatcagta |
279 |
Q |
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| T |
24291220 |
cgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaactttgacaagatcagta |
24291158 |
T |
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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 5773481 - 5773587
Alignment:
| Q |
172 |
acctgtctcataattgttgaatatgcattcaacgatccagtgtatcgcctgggcacgcctggaggcaatttcccttccgcttgaagtctaactttgacaa |
271 |
Q |
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|||||||||| |||| ||||| |||||||| ||||||| ||| |||||||| || || ||||| ||||| ||||| ||||||||||| |||||||||| |
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| T |
5773481 |
acctgtctcacgattgacgaataagcattcaaagatccagagtagcgcctgggaacaccaggaggtaattttccttctgcttgaagtcttactttgacaa |
5773580 |
T |
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| Q |
272 |
gatcagt |
278 |
Q |
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| T |
5773581 |
gatcagt |
5773587 |
T |
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