View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4158_high_1_N (Length: 441)
Name: NF4158_high_1_N
Description: NF4158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4158_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 5893906 - 5894332
Alignment:
| Q |
1 |
cctcaaaacaccatgttgatggtgaatgcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5893906 |
cctcaaaacaccatgttgatggtgaatgcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgaggatg |
5894005 |
T |
|
| Q |
101 |
gtcatcaaggagacaaacatgggtttattccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894006 |
gtcatcaaggagacaaacatgggtttattccttttgggatggggaggagggcttgtcctgggtcgggcttagccctgagaactttgagcttgactttggg |
5894105 |
T |
|
| Q |
201 |
atctttgattcaatgctttgaatggaaaagtattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattccatt-gct |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5894106 |
atctttgattcaatgctttgaatggaaaaggattggcaaggaaggagttgatatgactgaaggacgtggaactctgttgcctatggccattccattggag |
5894205 |
T |
|
| Q |
300 |
ccttactgcaaagctcgtccaataatcaataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgt |
399 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894206 |
gcacaatgcaaagctcgtccaataatcaataagcttttctcttaataattgtgtgtttgctaaagattcaaattgataagaaccttatgaataatgttgt |
5894305 |
T |
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| Q |
400 |
agaagttgaaaaaatattatttggtgt |
426 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
5894306 |
agaagttgaaaaaatattatttggtgt |
5894332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 5886186 - 5886278
Alignment:
| Q |
4 |
caaaacaccatgttgatggtgaatgcttgggctattcatagagaccctaatttgtgggctgaccctatgagctttaagcccgagaggtttgag |
96 |
Q |
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|||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| ||| |||| | |||||||| |||||||||||| |
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| T |
5886186 |
caaaacacaattttgatggtgaatgcttgggtcattcatagagatccaaatttgtggagtgatcctacttgttttaagccagagaggtttgag |
5886278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 9400359 - 9400327
Alignment:
| Q |
22 |
gtgaatgcttgggctattcatagagaccctaat |
54 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
9400359 |
gtgaatgcttgggctattcatagagactctaat |
9400327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 20074121 - 20074089
Alignment:
| Q |
22 |
gtgaatgcttgggctattcatagagaccctaat |
54 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
20074121 |
gtgaatgcttgggctattcatacagaccctaat |
20074089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 9000250 - 9000218
Alignment:
| Q |
22 |
gtgaatgcttgggctattcatagagaccctaat |
54 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
9000250 |
gtgaatgcttgggctattcagagagaccctaat |
9000218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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