View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4158_high_4 (Length: 332)
Name: NF4158_high_4
Description: NF4158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4158_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 35378671 - 35378352
Alignment:
| Q |
1 |
aatgtgacaaatttgctgaaacaaggaacttgagcaattactttgttacttgatttggcgattgatttaaacttggaagatggtagaagaatcaatatga |
100 |
Q |
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| T |
35378671 |
aatgtgacacatttgctgaaacaaggaacttgagcaattactttgttacttgatttggcgattgatttaaacttggaagatggtagaagaatcaatatga |
35378572 |
T |
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| Q |
101 |
catttatgaatgcggtaaaatgttgtagacttgtagtgagtggtctttcaattnnnnnnnnnnnnnnnnnnnnnngacattacattttccaaactatcac |
200 |
Q |
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| T |
35378571 |
catttatgaatgcggtaaaatgttgtagacttgtagtgagtggtctttcaatt--tatatatatgtatatatatagacattacattttccaaactatcac |
35378474 |
T |
|
| Q |
201 |
ttactcaccataacatatagcacacaagtttcacttcacttattcatacttagctatgacaagttctttagtgtttagttttagttgtttaatgttgata |
300 |
Q |
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| T |
35378473 |
ttactcaccataacatatagcacacaagtttcacttcacttattcatacttagctatgacaagttctttagtgtttagttttagttgtttaatgttgata |
35378374 |
T |
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| Q |
301 |
acaaatttgtttgtggcctttg |
322 |
Q |
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| T |
35378373 |
acaaatttgtttgtggcctttg |
35378352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 35359658 - 35359581
Alignment:
| Q |
34 |
gcaattactttgttacttgatttggcgattgatttaaacttggaagatggtagaagaatcaatatgacatttatgaatg |
112 |
Q |
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| T |
35359658 |
gcaattattttgttacttgattcggc-attgctttaaacttggaaggtggtagaaaattcaagaaaacatttatgaatg |
35359581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 28849635 - 28849778
Alignment:
| Q |
177 |
acattacattttccaaactatcacttactcaccataacatatagcac-acaagtttcacttcacttat--tcatacttagctatgacaagttctttagtg |
273 |
Q |
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|||| |||||||| ||||||||| |||||||||| |||||||||||| | |||||||| ||||||||| || |||||||| ||||| |||||| |||| |
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| T |
28849635 |
acataacattttc-aaactatcagttactcaccacaacatatagcacgaaaagtttcagttcacttattctcgtacttagccatgactagttctaaagtg |
28849733 |
T |
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| Q |
274 |
tttagttttagttgtttaatgttgataacaaatttgtttgtggccttt |
321 |
Q |
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| T |
28849734 |
tttagat---gttgtttaataatgataacaaatttgtttgtggacttt |
28849778 |
T |
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