View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4159_high_4 (Length: 315)
Name: NF4159_high_4
Description: NF4159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4159_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 54701362 - 54701662
Alignment:
| Q |
15 |
gagcaaacattgctgtggtagcacaaagaggaattcgaaaatgatatatgattcttgtctcctctagtcatttgctatataccaagaatatctcaactac |
114 |
Q |
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| T |
54701362 |
gagcaaacattgctgtggtagcacaaagaggaatttgaaaatgatatatgattcttgtctcctctattcatttgctatataccaagaatatctcaactac |
54701461 |
T |
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| Q |
115 |
tatgacgctaacttgtatcctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgcatag |
214 |
Q |
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| T |
54701462 |
tatgacgctaacttgtattctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgcatag |
54701561 |
T |
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| Q |
215 |
tcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgatgacttgcaggatttgtataggcacata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54701562 |
tcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgataacttgcaggatttgtataggcacata |
54701661 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
54701662 |
t |
54701662 |
T |
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