View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4160_high_4 (Length: 318)

Name: NF4160_high_4
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4160_high_4
NF4160_high_4
[»] chr1 (1 HSPs)
chr1 (1-299)||(48983080-48983374)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 48983374 - 48983080
Alignment:
Q  1 tgaaaagacaagtcgtgtgcacgaaaatgattcccttgaattcttaaatcaatcataagtacagatcaccataagactgagtgagtgacactgcctcacc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||    
T  48983374 tgaaaagacaagtcgtgtgcgcgaaaatgattcccttgaattcttaaatcaatcataagtacagatcaccataagactgagtga----caatgcctcacc 48983279  T
Q  101 ctcacaagtcatctctacaacatcaattgctacaaataacaccaacatggtaaaaatgtacttgtttcttttcctttaccaaaagcgtgttaattaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983278 ctcacaagtcatctctacaacatcaattgctacaaataacaccaacatggtaaaaatgtacttgtttcttttcctttaccaaaagcgtgttaattaatta 48983179  T
Q  201 agtgaactatgtctcagctcccaaaatgaatgccattgccaccaggtgatggaacttgactaagtacggtttacaaattactttcatggaatggcaacc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48983178 agtgaactatgtctcagctcccaaaatgaatgccattgccaccaggtgatggaacttgactaagtacggtttacaaattactttaaaggaatggcaacc 48983080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University