View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4160_high_5 (Length: 312)

Name: NF4160_high_5
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4160_high_5
NF4160_high_5
[»] chr4 (4 HSPs)
chr4 (18-312)||(23587687-23587981)
chr4 (18-312)||(23596539-23596833)
chr4 (20-308)||(54396345-54396633)
chr4 (250-294)||(35132600-35132644)
[»] chr7 (7 HSPs)
chr7 (18-285)||(8102587-8102854)
chr7 (18-282)||(8017397-8017661)
chr7 (29-288)||(39985577-39985836)
chr7 (62-201)||(8382941-8383080)
chr7 (62-203)||(8581664-8581805)
chr7 (68-189)||(7877810-7877931)
chr7 (263-291)||(8602139-8602167)
[»] chr2 (7 HSPs)
chr2 (30-288)||(17716665-17716923)
chr2 (30-288)||(17717926-17718187)
chr2 (30-201)||(17622010-17622181)
chr2 (32-255)||(17666694-17666917)
chr2 (30-201)||(17648106-17648277)
chr2 (105-288)||(17705716-17705899)
chr2 (33-201)||(17704120-17704288)
[»] chr1 (1 HSPs)
chr1 (68-153)||(34466906-34466991)
[»] chr6 (1 HSPs)
chr6 (77-177)||(11209371-11209471)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 23587981 - 23587687
Alignment:
Q  18 cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587981 cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg 23587882  T
Q  118 atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587881 atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 23587782  T
Q  218 gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc 312  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587781 gctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc 23587687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 23596833 - 23596539
Alignment:
Q  18 cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  23596833 cctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaaccttctaagagcccttgg 23596734  T
Q  118 atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596733 atttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 23596634  T
Q  218 gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc 312  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596633 gctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc 23596539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 54396345 - 54396633
Alignment:
Q  20 tcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggat 119  Q
    |||||||| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| |||| ||    
T  54396345 tcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcat 54396444  T
Q  120 ttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagc 219  Q
    | |||||||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| |||||||||||    
T  54396445 taccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagc 54396544  T
Q  220 tgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct 308  Q
     ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||    
T  54396545 agtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttct 54396633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 35132600 - 35132644
Alignment:
Q  250 aatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaa 294  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  35132600 aatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa 35132644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 8102587 - 8102854
Alignment:
Q  18 cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg 117  Q
    |||||||||| |||||||| |||||||| ||||| || || || || || || ||||| |||||||| || || ||||||||||| ||||| ||||| ||    
T  8102587 cctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagtgccctagg 8102686  T
Q  118 atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 217  Q
     ||||| |||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||||||||||| || | ||| ||||||||     
T  8102687 gtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacct 8102786  T
Q  218 gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccacc 285  Q
    || ||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||    
T  8102787 gcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacc 8102854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 8017661 - 8017397
Alignment:
Q  18 cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg 117  Q
    |||||||||| |||||||| |||||||| ||||| |||||||| || || || ||||| |||||||| ||||| || ||||| || ||||| || || ||    
T  8017661 cctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctcaacctcctaagtgctctagg 8017562  T
Q  118 atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca 217  Q
     |||||||||||||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||||||||    
T  8017561 gtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcacca 8017462  T
Q  218 gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccacc 282  Q
    || ||||| || || ||||| ||||| |||||||||||||| || || ||||||||||| |||||    
T  8017461 gcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacc 8017397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 39985577 - 39985836
Alignment:
Q  29 gaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaa 128  Q
    |||||||||||||||||||| || |||||||| || || || ||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| |    
T  39985577 gaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcctaagagctctggggttgccactga 39985676  T
Q  129 tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt 228  Q
    | |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| | ||| || || || ||||| |||||    
T  39985677 tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggcttt 39985776  T
Q  229 cacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag 288  Q
    ||||||||||||||| ||||||||||| || |  || ||||||||||| |||||||||||    
T  39985777 cacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaag 39985836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 8383080 - 8382941
Alignment:
Q  62 gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa 161  Q
    ||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||| || |||||||| ||||| |||| |||||||||||| || | ||    
T  8383080 gaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaa 8382981  T
Q  162 caaaatggttcaccatcctgttatcaaaatcttcacctcc 201  Q
    |||| |  ||||| || |||||||| || |||||||||||    
T  8382980 caaagtacttcacgattctgttatctaagtcttcacctcc 8382941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 8581664 - 8581805
Alignment:
Q  62 gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa 161  Q
    ||||| ||||| || |||||||| |||||||| ||||| |||||||  ||  ||||||||||| |||| ||||  ||||  || |||||||| ||    |    
T  8581664 gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca 8581763  T
Q  162 caaaatggttcaccatcctgttatcaaaatcttcacctccca 203  Q
    |||| || |||||||| ||||||||||||||||| |||||||    
T  8581764 caaagtgattcaccattctgttatcaaaatcttcccctccca 8581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 7877931 - 7877810
Alignment:
Q  68 gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaat 167  Q
    ||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||||||| ||| |||   |||||||||||||| || ||    || ||||    
T  7877931 gtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaat 7877832  T
Q  168 ggttcaccatcctgttatcaaa 189  Q
    |||||| ||| |||||||||||    
T  7877831 ggttcaacattctgttatcaaa 7877810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 8602139 - 8602167
Alignment:
Q  263 gaaacatcaaaagttccaccaccaagatc 291  Q
    |||||||||||||||||||||||||||||    
T  8602139 gaaacatcaaaagttccaccaccaagatc 8602167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 17716923 - 17716665
Alignment:
Q  30 aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat 129  Q
    ||||||||||||||||||| || |||||||| || || |  ||||| || ||||| |||||||| ||||| ||  ||||||| ||||| || ||||||||    
T  17716923 aatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctcataagagctcttgggttgccactaat 17716824  T
Q  130 atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc 229  Q
     |||||||| ||||| |||||||| ||| ||||||| ||||||||||| ||||||| |||||| |||||||| | ||| |  || || |||||||||||     
T  17716823 gtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttta 17716724  T
Q  230 acctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag 288  Q
    |||| |||| |||  ||||||||||| || |  || ||||||||||| |||||||||||    
T  17716723 acctgaaagttacactcttcaatagttagcaaagagacatcaaaagtaccaccaccaag 17716665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 17718187 - 17717926
Alignment:
Q  30 aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttc-taagagcccttggatttccactaa 128  Q
    ||||||||||||||||||| || | |||||| || || |  ||||| || ||||| |||||||| ||||| |||| ||||||| ||||| || |||||||    
T  17718187 aatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaa-cttcataagagctcttgggttgccactaa 17718089  T
Q  129 tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt 228  Q
    | |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| | ||| |  || || |||||||||||    
T  17718088 tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttt 17717989  T
Q  229 cacctcaaagataccttcttcaatagta---agtagtgaaacatcaaaagttccaccaccaag 288  Q
     |||| |||| |||  ||||||||||||   || |  || ||||||||||| |||||||||||    
T  17717988 aacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagtaccaccaccaag 17717926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 17622181 - 17622010
Alignment:
Q  30 aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat 129  Q
    ||||||||||||||||||||||  ||||| | || || || ||||| ||  |||| |||||||| ||||| ||  ||||||| ||||| || ||||| ||    
T  17622181 aatcaatttcaatggtggtttggacagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgat 17622082  T
Q  130 atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc 201  Q
     |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  17622081 gtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctcc 17622010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 17666917 - 17666694
Alignment:
Q  32 tcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatat 131  Q
    ||||||||||||||||| ||||||||||| || || |  ||||| || ||||| |||||||| | ||| ||  ||||||| ||||| || ||||| || |    
T  17666917 tcaatttcaatggtggtctgagcagtagatgatagagctctcttcgccctctcacaagcagtccccaacctcataagagctcttgggttgccactgatgt 17666818  T
Q  132 ccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcac 231  Q
    |||| || ||||| || ||||| ||||||||||| || |||||||| ||||||| |||||| |||||||| | ||| |  || || | ||||||||| ||    
T  17666817 ccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacctccaagatgggggtctccggttgtagctttaac 17666718  T
Q  232 ctcaaagataccttcttcaatagt 255  Q
    | ||| |||||| |||||||||||    
T  17666717 cccaatgataccctcttcaatagt 17666694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 17648277 - 17648106
Alignment:
Q  30 aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat 129  Q
    ||||||||||||||||||||||   |||| | || || || ||||| ||  |||| |||||||| ||||| ||  ||||||| ||||| || ||||||||    
T  17648277 aatcaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaat 17648178  T
Q  130 atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc 201  Q
     |||||||| ||||| ||||||||  |||||||||| || |||||||| ||||||| |||||| ||||||||    
T  17648177 gtccttcttgttctttctcttgaacacttgaacaaagtgattcaccattctgttattaaaatcctcacctcc 17648106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 288
Target Start/End: Complemental strand, 17705899 - 17705716
Alignment:
Q  105 taagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaa 204  Q
    ||||||| | ||| || |||||||| |||||||| ||||| |||||||| |||| |||||| ||||||||||| ||||||| |||||| |||||||| |     
T  17705899 taagagctcatgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaag 17705800  T
Q  205 atgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag 288  Q
    ||| || || || | | ||||||| ||||||| || ||  ||||||| ||| || |  ||  |||||||||| |||||||||||    
T  17705799 atgggtgtctccggatatagctttaacctcaacgacactctcttcaaaagttagcaaagaggcatcaaaagtcccaccaccaag 17705716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 17704288 - 17704120
Alignment:
Q  33 caatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatc 132  Q
    |||||||||||||||||||   |||| | || || || ||||| ||  |||| |||||||| ||||| ||  ||||||| ||| | |  ||||| || ||    
T  17704288 caatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctctttggtcgccactgatgtc 17704189  T
Q  133 cttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc 201  Q
    |||| | ||||| |||||||| ||||||||||| | ||||||||| ||||||| |||||| ||||||||    
T  17704188 cttcctgttctttctcttgaactcttgaacaaagtagttcaccattctgttattaaaatcctcacctcc 17704120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 34466991 - 34466906
Alignment:
Q  68 gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaa 153  Q
    |||||||| ||  ||||||| ||||||||||| || || | ||| || || ||||||||||||||||| |||| ||||||||||||    
T  34466991 gtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaa 34466906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 11209371 - 11209471
Alignment:
Q  77 gctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcacca 176  Q
    |||||||||||||||||  |||  || ||||| || ||||||||||||||||| ||| | || | |||||||  ||| ||||  ||||||||||||||||    
T  11209371 gctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcacca 11209470  T
Q  177 t 177  Q
    |    
T  11209471 t 11209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University