View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4160_high_7 (Length: 272)
Name: NF4160_high_7
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 4364734 - 4364918
Alignment:
| Q |
84 |
ggtctagttgaatattttgtttaacaagagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaattt |
183 |
Q |
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| T |
4364734 |
ggtctagttgaatattttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaattt |
4364833 |
T |
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| Q |
184 |
gaagcttcaaaccatgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
268 |
Q |
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| T |
4364834 |
gaagcttcaaaccatgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4364918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 4372327 - 4372511
Alignment:
| Q |
84 |
ggtctagttgaatattttgtttaacaagagtgatagatatttgcatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaattt |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372327 |
ggtctagttgaatattttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaattt |
4372426 |
T |
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| Q |
184 |
gaagcttcaaaccatgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
268 |
Q |
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| T |
4372427 |
gaagcttcaaaccatgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4372511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 41042773 - 41042653
Alignment:
| Q |
127 |
catacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagc |
226 |
Q |
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|||||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||| |
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| T |
41042773 |
catacctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagc |
41042674 |
T |
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| Q |
227 |
ataagcttcccaattatactt |
247 |
Q |
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| T |
41042673 |
ataagcttcccagttatactt |
41042653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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