View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4160_low_10 (Length: 251)
Name: NF4160_low_10
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 41511096 - 41510872
Alignment:
| Q |
18 |
caacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcat |
117 |
Q |
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| T |
41511096 |
caacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcat |
41510997 |
T |
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| Q |
118 |
ttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgcca |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41510996 |
ttcagcttcttgcattttctcagcaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgcca |
41510897 |
T |
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| Q |
218 |
ggaatagagaaaaactctgtctctg |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
41510896 |
ggaatagagaaaaactctgtctctg |
41510872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 41520683 - 41520544
Alignment:
| Q |
103 |
accatatgatttcatttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaatt |
202 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41520683 |
accatatgatttcatttcagcttcttgcgttttctcagaaaaccccttcatcttttcctctttcactgttcctgttatctgttcttttgtgacttgaatt |
41520584 |
T |
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| Q |
203 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
242 |
Q |
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| T |
41520583 |
ttgtcaggtatgccaggaatagagaaaaactctgtctctg |
41520544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 48532450 - 48532255
Alignment:
| Q |
18 |
caacacaccaaaccttatcatttcttacctttttgtaatcattaacatattctttctctaactcctcaaaactgtttatgattacaccatatgatttcat |
117 |
Q |
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||||| |||| ||||| ||||| || |||| |||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
48532450 |
caacaaaccataccttgccatttttttccttcttgtaatccttaacatatgctttctccaactcctcaaaagtgtttatgatttcaccatatgacttcat |
48532351 |
T |
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| Q |
118 |
ttcagcttcttgcattttctcaggaaaccccttcatcttttcctctttcactgttcctggtatctgttcttttgtgacttgaattttgtcaggtatgcc |
216 |
Q |
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|||||| || ||||| ||||| |||| |||||| ||| |||||| | ||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
48532350 |
ttcagcatcatgcatcttctccccaaactccttca---gttcacctttcaatattcctggtatctgctctttggtgacttgaatttggtcaggtatgcc |
48532255 |
T |
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