View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4160_low_11 (Length: 244)
Name: NF4160_low_11
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 21924422 - 21924190
Alignment:
| Q |
11 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataat-----------------a |
93 |
Q |
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| T |
21924422 |
cagagactgatacaaaattggggggaaaatggctgcaccattcaagacatacacgaagagtaatctgctactgctgaataatgtctgaaactcctaaaca |
21924323 |
T |
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| Q |
94 |
tgtctgaaaataatttctgctctgaacgaaaacaatttctgctcgaattagcacaaactcttgccttttaatactgaaaataacttgctgtagggaaaat |
193 |
Q |
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| T |
21924322 |
tctttgcaaacaacaactgctctgaacgaaaacaatttctgctcgaattagtacaaactctttccttttaatactg-aaataacttgctgcagaaaaaat |
21924224 |
T |
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| Q |
194 |
agagcagcacataagtattttgaatccccaaatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21924223 |
agagcagcacataagtattttgaatccccaaatt |
21924190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 39483770 - 39483861
Alignment:
| Q |
11 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataatatgtctgaaa |
102 |
Q |
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| T |
39483770 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttaaataatatgtctgaaa |
39483861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 26844216 - 26844157
Alignment:
| Q |
168 |
tgaaaataacttgctgtagggaaaatagagcagcacataagtattttgaatccccaaatt |
227 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
26844216 |
tgaaaataacttactgcagggaaaatagagcagcacataagtgttttgaatcctcaaatt |
26844157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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