View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4160_low_12 (Length: 237)

Name: NF4160_low_12
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4160_low_12
NF4160_low_12
[»] chr5 (14 HSPs)
chr5 (10-220)||(39480277-39480487)
chr5 (10-185)||(39458384-39458559)
chr5 (52-185)||(39486405-39486538)
chr5 (59-174)||(39454592-39454707)
chr5 (58-174)||(39450952-39451068)
chr5 (59-168)||(39464641-39464750)
chr5 (33-174)||(39475433-39475574)
chr5 (53-174)||(39471983-39472104)
chr5 (56-180)||(43312608-43312732)
chr5 (59-185)||(39470847-39470973)
chr5 (53-184)||(39460197-39460328)
chr5 (184-221)||(19390212-19390249)
chr5 (183-221)||(43028241-43028279)
chr5 (184-220)||(21157427-21157463)
[»] chr1 (3 HSPs)
chr1 (184-220)||(21221526-21221562)
chr1 (184-221)||(14008234-14008271)
chr1 (184-221)||(42936055-42936092)
[»] chr4 (4 HSPs)
chr4 (182-221)||(22292665-22292704)
chr4 (184-221)||(5452201-5452238)
chr4 (184-220)||(4118122-4118158)
chr4 (184-220)||(18207855-18207891)
[»] chr3 (1 HSPs)
chr3 (184-221)||(13366677-13366714)
[»] chr6 (2 HSPs)
chr6 (184-220)||(164518-164554)
chr6 (184-220)||(15434736-15434772)
[»] chr2 (1 HSPs)
chr2 (184-220)||(42948880-42948916)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 39480277 - 39480487
Alignment:
Q  10 agaacaatagaaaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatcta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39480277 agaacaatagaaaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatcta 39480376  T
Q  110 gtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttggtcatgaaatctttatatttaatccaaaggtaca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39480377 gtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttggtcatgaaatctttatatctaatccaaaggtaca 39480476  T
Q  210 tttgcaaacaa 220  Q
    |||||||||||    
T  39480477 tttgcaaacaa 39480487  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 39458559 - 39458384
Alignment:
Q  10 agaacaatagaaaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatcta 109  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39458559 agaacaattgagaacacagtcactcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatcta 39458460  T
Q  110 gtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtctccgaataactgttttggtcatgaaat 185  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  39458459 gtttccaccctcgaatttgcaaagcttctaatcaaccgtgataaccgtctccgaataactatcttggtcatgaaat 39458384  T

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Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 39486405 - 39486538
Alignment:
Q  52 atccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgat 151  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  39486405 atccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgat 39486504  T
Q  152 aaccgtctccgaataactgttttggtcatgaaat 185  Q
    |||||||||||||||||  | |||||||| ||||    
T  39486505 aaccgtctccgaataaccatcttggtcatcaaat 39486538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 39454592 - 39454707
Alignment:
Q  59 atgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtc 158  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  159 tccgaataactgtttt 174  Q
    ||||||||||||||||    
T  39454692 tccgaataactgtttt 39454707  T

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Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 39450952 - 39451068
Alignment:
Q  58 gatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgt 157  Q
    |||||||||||||||||||||| ||||| |||  ||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  158 ctccgaataactgtttt 174  Q
    |||||| ||||||||||    
T  39451052 ctccgagtaactgtttt 39451068  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 39464750 - 39464641
Alignment:
Q  59 atgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtc 158  Q
    ||||||||||||||||| ||| ||||| |||  || | ||| ||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  159 tccgaataac 168  Q
    ||||||||||    
T  39464650 tccgaataac 39464641  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 39475433 - 39475574
Alignment:
Q  33 tcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaa 132  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| ||||| |||  || ||| |  | |||||| ||||||| ||||| || | |||    
T  39475433 tcacactgatcaagtgtatatccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaa 39475532  T
Q  133 gcttctaatcaaccgtgataaccgtctccgaataactgtttt 174  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  39475533 gcttctaatcaatcgtgataaccgtctccgagtaactgtttt 39475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 39471983 - 39472104
Alignment:
Q  53 tccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgata 152  Q
    |||| |||||||||||||||||||||| || || |||  || | ||  |||||| |||||||  | || || || |||||||||||||||||||||||||    
T  39471983 tccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata 39472082  T
Q  153 accgtctccgaataactgtttt 174  Q
    ||||||||||||||||||||||    
T  39472083 accgtctccgaataactgtttt 39472104  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 43312732 - 43312608
Alignment:
Q  56 aggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 155  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| ||||||||||| || || |||||||| ||||||||||||||||    
T  43312732 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataacc 43312633  T
Q  156 gtctccgaataactgttttggtcat 180  Q
    |||||||  |||| || ||||||||    
T  43312632 gtctccgtgtaaccgtcttggtcat 43312608  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 39470973 - 39470847
Alignment:
Q  59 atgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataaccgtc 158  Q
    ||||||||||  ||||||||| ||||| |||  || | ||| ||||||||||||||  || | || ||||| |||||||||||||||| ||||||||| |    
T  39470973 atgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgataaccgcc 39470874  T
Q  159 tccgaataactgttttggtcatgaaat 185  Q
    || |||||||||| || ||||||||||    
T  39470873 tctgaataactgtcttagtcatgaaat 39470847  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 39460197 - 39460328
Alignment:
Q  53 tccaggatgaagaaagcagaagtggtgattatcacttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgata 152  Q
    |||| |||||||||||||||||| ||| ||||| |||  || |||    | ||||||| |||||||||||| ||||| |||||||||| |||||||||||    
T  39460197 tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgata 39460296  T
Q  153 accgtctccgaataactgttttggtcatgaaa 184  Q
    | || |||||||| |||||  | |||||||||    
T  39460297 agcgcctccgaattactgtcctagtcatgaaa 39460328  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 19390212 - 19390249
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19390212 atctttatatttaatccaaaggtacatttgcaaacaat 19390249  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 43028279 - 43028241
Alignment:
Q  183 aatctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  43028279 aatctttatatctaatccaaaggtacaattgcaaacaat 43028241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 21157463 - 21157427
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  21157463 atctttatatctaatccaaatgtacatttgcaaacaa 21157427  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 21221562 - 21221526
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  21221562 atctttatatttaatccaaaggtacatttgcaaacaa 21221526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 14008234 - 14008271
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14008234 atctttatatctaatccaaaggtacatttgcaaacaat 14008271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 42936092 - 42936055
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42936092 atctttatatctaatccaaaggtacatttgcaaacaat 42936055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 22292704 - 22292665
Alignment:
Q  182 aaatctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  22292704 aaatctttatatctaatccaaaggtacatttgcaaacaat 22292665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 5452201 - 5452238
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  5452201 atctttatatttaattcaaaggtacatttgcaaacaat 5452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 4118158 - 4118122
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4118158 atctttatatctaatccaaaggtacatttgcaaacaa 4118122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 18207855 - 18207891
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18207855 atctttatatctaatccaaaggtacatttgcaaacaa 18207891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 13366714 - 13366677
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaat 221  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13366714 atctttatatctaatccaaaggtacatttgcaaacaat 13366677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 164554 - 164518
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| ||||||||||||||||||||||||||    
T  164554 atctttatatctaatccaaaggtacatttgcaaacaa 164518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15434772 - 15434736
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| |||||||||||||| |||||||||||    
T  15434772 atctttatatctaatccaaaggtacctttgcaaacaa 15434736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 42948916 - 42948880
Alignment:
Q  184 atctttatatttaatccaaaggtacatttgcaaacaa 220  Q
    |||||||||| ||||||||||||||||||||||||||    
T  42948916 atctttatatctaatccaaaggtacatttgcaaacaa 42948880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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