View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4160_low_2 (Length: 385)
Name: NF4160_low_2
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 31 - 379
Target Start/End: Original strand, 33269297 - 33269649
Alignment:
| Q |
31 |
atggttgatcaagcacagaaa----gttaatctctatctgcttgcattgcagtgatacctcacctggcgtagcacacgatgctttcaacaccttcttcag |
126 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33269297 |
atggttgattaagcacagaaatgttgttaatctatatctacttgcattgcagtgataccacacctggcgtagcacacgatgctttcaacaccttcttcag |
33269396 |
T |
|
| Q |
127 |
tgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaagaactggttcgtacagacaacttttt |
226 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33269397 |
tgagaccggatctggcaagcatgtaccaagggccttatttgttgatctggaacctactgttatcgatgaagtaagaactggttcttacagacaacttttt |
33269496 |
T |
|
| Q |
227 |
caccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacaccggtaaggcaatttctaatgcagttcaaattagct |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33269497 |
caccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacaccggtaaggcaatttctaatacagttcaaattagct |
33269596 |
T |
|
| Q |
327 |
attttcttcactttttagcttgacagtggtcattatttgtgtatctgtgctgc |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33269597 |
attttcttcactttttagcttgacagtggccattatttgtgtatctgtgctgc |
33269649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 10033550 - 10033406
Alignment:
| Q |
147 |
atgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaagaactggttcgtacagacaactttttcaccctgagcaattaatttc |
246 |
Q |
| |
|
|||| |||||||| ||||||||||||| || || |||||||| |||||| | ||| ||||| | || |||||||||||||| || || || |||||| | |
|
|
| T |
10033550 |
atgttccaagggctctatttgttgatctagagcctactgtaattgatgaaattagatctggtccttatagacaactttttcatccagaacagttaattac |
10033451 |
T |
|
| Q |
247 |
tggcaaggaagatgccgctaataattttgcaaggggacactacac |
291 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
10033450 |
tggcaaagaagatgctgctaataattttgcaagaggacattacac |
10033406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 291
Target Start/End: Complemental strand, 35670537 - 35670341
Alignment:
| Q |
95 |
gtagcacacgatgctttcaacaccttcttcagtgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatg |
194 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || ||||| || ||||| || || || | ||| | || || ||||| |||||||| || ||||||| |
|
|
| T |
35670537 |
gtagcacacgatgcattcaacacattcttcagcgaaactggttccggcaaacacgttcctcgcgccgtcttcgtagatcttgaacccaccgtcatcgatg |
35670438 |
T |
|
| Q |
195 |
aagtaagaactggttcgtacagacaactttttcaccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacac |
291 |
Q |
| |
|
|||| | | ||| | ||| ||||||| || |||||||| ||| | || || ||||| ||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
35670437 |
aagttcgttccggtacctaccgacaactcttccaccctgaacaactcatctccggcaaagaagacgccgctaacaattttgctagaggacactacac |
35670341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 40378426 - 40378291
Alignment:
| Q |
102 |
acgatgctttcaacaccttcttcagtgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | || |||||||| || | || | ||||| ||||| || |||||||| || |||||||| || |
|
|
| T |
40378426 |
acgatgctttcaacaccttcttcagtgaaactggagctggaaagcatgtgcctcgtgcagtttttgtagatctcgagcccactgtgattgatgaagtgag |
40378327 |
T |
|
| Q |
202 |
aactggttcgtacagacaactttttcaccctgagca |
237 |
Q |
| |
|
||||| | ||| | ||||| ||||| |||||||| |
|
|
| T |
40378326 |
gactgggacataccgccaactatttcatcctgagca |
40378291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University