View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4160_low_4 (Length: 368)
Name: NF4160_low_4
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 45975938 - 45976273
Alignment:
| Q |
19 |
attatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagagg |
118 |
Q |
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| T |
45975938 |
attatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagagg |
45976037 |
T |
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| Q |
119 |
ttgaggaattttcacaagtgtgttgtacttcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtact |
218 |
Q |
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| T |
45976038 |
ttgaggaattttcacaagtgtgttgtacttcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtact |
45976137 |
T |
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| Q |
219 |
gtattggtgtgttaatttactgagatagctttgtggtgtgtgtagataattaatatgcctgctagtagcatatcaattatcataccaaattttctatttt |
318 |
Q |
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| T |
45976138 |
gtattggtgtgttaatttactgagatagctttgtggtgtgtgtagataattgatatgcctgctagtagcatatcaattatcataccaaattttctatttt |
45976237 |
T |
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| Q |
319 |
attagtcgcacaaggacgttagtaactatgcacagg |
354 |
Q |
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| T |
45976238 |
attagtcgcacaaggacgttagtaactatgcacagg |
45976273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 28052450 - 28052311
Alignment:
| Q |
65 |
ttcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtgttgtacttcccattggtggtctat |
164 |
Q |
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| T |
28052450 |
ttccctgtggagcaaggagatctgcaaaaaaggtggaagatggttagtaagcggttgaggaattttcatcagtgtgttgtgcttccagttggtaatttgt |
28052351 |
T |
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| Q |
165 |
cttctggtctttgtaggcatcgagcgattctcttcaaggt |
204 |
Q |
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| T |
28052350 |
ccacgggactctgtaggcatcgcgcaattctcttcaaggt |
28052311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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