View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4160_low_6 (Length: 312)
Name: NF4160_low_6
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_6 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 23587981 - 23587687
Alignment:
| Q |
18 |
cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587981 |
cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg |
23587882 |
T |
|
| Q |
118 |
atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587881 |
atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
23587782 |
T |
|
| Q |
218 |
gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587781 |
gctgtagctttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc |
23587687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 23596833 - 23596539
Alignment:
| Q |
18 |
cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
23596833 |
cctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaaccttctaagagcccttgg |
23596734 |
T |
|
| Q |
118 |
atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596733 |
atttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
23596634 |
T |
|
| Q |
218 |
gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596633 |
gctgtagctttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctc |
23596539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 54396345 - 54396633
Alignment:
| Q |
20 |
tcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggat |
119 |
Q |
| |
|
|||||||| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||| |||| || |
|
|
| T |
54396345 |
tcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcat |
54396444 |
T |
|
| Q |
120 |
ttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagc |
219 |
Q |
| |
|
| |||||||||||||||||||| |||||| | || || ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |
|
|
| T |
54396445 |
taccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagc |
54396544 |
T |
|
| Q |
220 |
tgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttct |
308 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| || |||||||| ||||||||||| || | || |||||||| ||||||| |
|
|
| T |
54396545 |
agtagctttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttct |
54396633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 35132600 - 35132644
Alignment:
| Q |
250 |
aatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaa |
294 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
35132600 |
aatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa |
35132644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 8102587 - 8102854
Alignment:
| Q |
18 |
cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg |
117 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| || || || || || || ||||| |||||||| || || ||||||||||| ||||| ||||| || |
|
|
| T |
8102587 |
cctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagtgccctagg |
8102686 |
T |
|
| Q |
118 |
atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
217 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||||||||||| || | ||| |||||||| |
|
|
| T |
8102687 |
gtttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacct |
8102786 |
T |
|
| Q |
218 |
gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccacc |
285 |
Q |
| |
|
|| ||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
8102787 |
gcagtagccttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacc |
8102854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 8017661 - 8017397
Alignment:
| Q |
18 |
cctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttgg |
117 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||| || || || ||||| |||||||| ||||| || ||||| || ||||| || || || |
|
|
| T |
8017661 |
cctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctcaacctcctaagtgctctagg |
8017562 |
T |
|
| Q |
118 |
atttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcacca |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || ||||||||||| || ||||| ||||| |||||||||||||| || | ||| ||||||||| |
|
|
| T |
8017561 |
gtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcacca |
8017462 |
T |
|
| Q |
218 |
gctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccacc |
282 |
Q |
| |
|
|| ||||| || || ||||| ||||| |||||||||||||| || || ||||||||||| ||||| |
|
|
| T |
8017461 |
gcagtagccttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacc |
8017397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 39985577 - 39985836
Alignment:
| Q |
29 |
gaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaa |
128 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || || || ||||| ||||| || |||||||| ||||| || |||||||| || || || ||||| | |
|
|
| T |
39985577 |
gaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcctaagagctctggggttgccactga |
39985676 |
T |
|
| Q |
129 |
tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt |
228 |
Q |
| |
|
| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| | ||| || || || ||||| ||||| |
|
|
| T |
39985677 |
tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggcttt |
39985776 |
T |
|
| Q |
229 |
cacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
288 |
Q |
| |
|
||||||||||||||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
39985777 |
cacctcaaagataccctcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
39985836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 8383080 - 8382941
Alignment:
| Q |
62 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
161 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||| || |||||||| ||||| |||| |||||||||||| || | || |
|
|
| T |
8383080 |
gaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaa |
8382981 |
T |
|
| Q |
162 |
caaaatggttcaccatcctgttatcaaaatcttcacctcc |
201 |
Q |
| |
|
|||| | ||||| || |||||||| || ||||||||||| |
|
|
| T |
8382980 |
caaagtacttcacgattctgttatctaagtcttcacctcc |
8382941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 8581664 - 8581805
Alignment:
| Q |
62 |
gaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaa |
161 |
Q |
| |
|
||||| ||||| || |||||||| |||||||| ||||| ||||||| || ||||||||||| |||| |||| |||| || |||||||| || | |
|
|
| T |
8581664 |
gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca |
8581763 |
T |
|
| Q |
162 |
caaaatggttcaccatcctgttatcaaaatcttcacctccca |
203 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8581764 |
caaagtgattcaccattctgttatcaaaatcttcccctccca |
8581805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 7877931 - 7877810
Alignment:
| Q |
68 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaat |
167 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| || ||||| ||||| || ||||||| ||| ||| |||||||||||||| || || || |||| |
|
|
| T |
7877931 |
gtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaat |
7877832 |
T |
|
| Q |
168 |
ggttcaccatcctgttatcaaa |
189 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
7877831 |
ggttcaacattctgttatcaaa |
7877810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 291
Target Start/End: Original strand, 8602139 - 8602167
Alignment:
| Q |
263 |
gaaacatcaaaagttccaccaccaagatc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8602139 |
gaaacatcaaaagttccaccaccaagatc |
8602167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 17716923 - 17716665
Alignment:
| Q |
30 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
129 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || | ||||| || ||||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17716923 |
aatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctcataagagctcttgggttgccactaat |
17716824 |
T |
|
| Q |
130 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttc |
229 |
Q |
| |
|
|||||||| ||||| |||||||| ||| ||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17716823 |
gtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttta |
17716724 |
T |
|
| Q |
230 |
acctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
288 |
Q |
| |
|
|||| |||| ||| ||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17716723 |
acctgaaagttacactcttcaatagttagcaaagagacatcaaaagtaccaccaccaag |
17716665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 17718187 - 17717926
Alignment:
| Q |
30 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttc-taagagcccttggatttccactaa |
128 |
Q |
| |
|
||||||||||||||||||| || | |||||| || || | ||||| || ||||| |||||||| ||||| |||| ||||||| ||||| || ||||||| |
|
|
| T |
17718187 |
aatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaa-cttcataagagctcttgggttgccactaa |
17718089 |
T |
|
| Q |
129 |
tatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagcttt |
228 |
Q |
| |
|
| |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| | ||| | || || ||||||||||| |
|
|
| T |
17718088 |
tgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagcttt |
17717989 |
T |
|
| Q |
229 |
cacctcaaagataccttcttcaatagta---agtagtgaaacatcaaaagttccaccaccaag |
288 |
Q |
| |
|
|||| |||| ||| |||||||||||| || | || ||||||||||| ||||||||||| |
|
|
| T |
17717988 |
aacctgaaagttacactcttcaatagtagttagcaaagagacatcaaaagtaccaccaccaag |
17717926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 17622181 - 17622010
Alignment:
| Q |
30 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || ||||| || |
|
|
| T |
17622181 |
aatcaatttcaatggtggtttggacagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgat |
17622082 |
T |
|
| Q |
130 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
201 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17622081 |
gtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctcc |
17622010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 17666917 - 17666694
Alignment:
| Q |
32 |
tcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatat |
131 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || | ||||| || ||||| |||||||| | ||| || ||||||| ||||| || ||||| || | |
|
|
| T |
17666917 |
tcaatttcaatggtggtctgagcagtagatgatagagctctcttcgccctctcacaagcagtccccaacctcataagagctcttgggttgccactgatgt |
17666818 |
T |
|
| Q |
132 |
ccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcac |
231 |
Q |
| |
|
|||| || ||||| || ||||| ||||||||||| || |||||||| ||||||| |||||| |||||||| | ||| | || || | ||||||||| || |
|
|
| T |
17666817 |
ccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacctccaagatgggggtctccggttgtagctttaac |
17666718 |
T |
|
| Q |
232 |
ctcaaagataccttcttcaatagt |
255 |
Q |
| |
|
| ||| |||||| ||||||||||| |
|
|
| T |
17666717 |
cccaatgataccctcttcaatagt |
17666694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 17648277 - 17648106
Alignment:
| Q |
30 |
aatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaat |
129 |
Q |
| |
|
|||||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||||| || |||||||| |
|
|
| T |
17648277 |
aatcaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaat |
17648178 |
T |
|
| Q |
130 |
atccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
201 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| || |||||||| ||||||| |||||| |||||||| |
|
|
| T |
17648177 |
gtccttcttgttctttctcttgaacacttgaacaaagtgattcaccattctgttattaaaatcctcacctcc |
17648106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 288
Target Start/End: Complemental strand, 17705899 - 17705716
Alignment:
| Q |
105 |
taagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaa |
204 |
Q |
| |
|
||||||| | ||| || |||||||| |||||||| ||||| |||||||| |||| |||||| ||||||||||| ||||||| |||||| |||||||| | |
|
|
| T |
17705899 |
taagagctcatgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaag |
17705800 |
T |
|
| Q |
205 |
atgtgtatcaccagctgtagctttcacctcaaagataccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaag |
288 |
Q |
| |
|
||| || || || | | ||||||| ||||||| || || ||||||| ||| || | || |||||||||| ||||||||||| |
|
|
| T |
17705799 |
atgggtgtctccggatatagctttaacctcaacgacactctcttcaaaagttagcaaagaggcatcaaaagtcccaccaccaag |
17705716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 17704288 - 17704120
Alignment:
| Q |
33 |
caatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatc |
132 |
Q |
| |
|
||||||||||||||||||| |||| | || || || ||||| || |||| |||||||| ||||| || ||||||| ||| | | ||||| || || |
|
|
| T |
17704288 |
caatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacctcataagagctctttggtcgccactgatgtc |
17704189 |
T |
|
| Q |
133 |
cttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcc |
201 |
Q |
| |
|
|||| | ||||| |||||||| ||||||||||| | ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
17704188 |
cttcctgttctttctcttgaactcttgaacaaagtagttcaccattctgttattaaaatcctcacctcc |
17704120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 34466991 - 34466906
Alignment:
| Q |
68 |
gtcctcttagctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaa |
153 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| || || | ||| || || ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34466991 |
gtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaa |
34466906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 11209371 - 11209471
Alignment:
| Q |
77 |
gctctctcgcaagcagttctcaatcttctaagagcccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcacca |
176 |
Q |
| |
|
||||||||||||||||| ||| || ||||| || ||||||||||||||||| ||| | || | ||||||| ||| |||| |||||||||||||||| |
|
|
| T |
11209371 |
gctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcacca |
11209470 |
T |
|
| Q |
177 |
t |
177 |
Q |
| |
|
| |
|
|
| T |
11209471 |
t |
11209471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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