View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4160_low_8 (Length: 294)
Name: NF4160_low_8
Description: NF4160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4160_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6350886 - 6350621
Alignment:
| Q |
1 |
gaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc--ttagctatcatagactaactgcactctatcataactctctctaact |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350886 |
gaagagggaaaattcattatttcactaactgagtttggtaaaatgcttaagcgtttacctaccatagactaactgcactctatcataactctctctaact |
6350787 |
T |
|
| Q |
99 |
gccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaacggtta |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350786 |
gccataacagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaacggtta |
6350687 |
T |
|
| Q |
197 |
caacaaaggttaaaaagagagagttggtaataaagaaattccattttctccatcgttttccctctt |
262 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350686 |
caacagaggttaaagagagagagttagtaataaagaaattccattttctccatcgttttccctctt |
6350621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 35082093 - 35081986
Alignment:
| Q |
76 |
ctctatcataactctctctaactgccataacagaatctaa--ttatgtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttct |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35082093 |
ctctatcatagttctctctaactgccatagcagaatctaagcttatgtggcaagttagttagagctatgtcaagttacttgcttctcaagtaatctttct |
35081994 |
T |
|
| Q |
174 |
tcttcttc |
181 |
Q |
| |
|
|||||||| |
|
|
| T |
35081993 |
tcttcttc |
35081986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35084236 - 35084185
Alignment:
| Q |
1 |
gaagagggaaaattcattatttcactaactgagtttggtacaatggttaagc |
52 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
35084236 |
gaagagagaaaattcattatttcactaaccgagtttgttacaatggttaagc |
35084185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 11021744 - 11021815
Alignment:
| Q |
120 |
gtggcaagttacttagagctatgtcaagttacttgcttctcaagtaatctttcttcttcttccattcttaac |
191 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
11021744 |
gtggcaagtttgttagagctatgtcaggttacttgctcctcaagtaatcttccatcttcttccattcttaac |
11021815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 6290214 - 6290254
Alignment:
| Q |
151 |
cttgcttctcaagtaatctttcttcttcttccattcttaac |
191 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
6290214 |
cttgctcctcaagtaatcttccttcttcttccattcttaac |
6290254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University