View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4161_high_3 (Length: 347)

Name: NF4161_high_3
Description: NF4161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4161_high_3
NF4161_high_3
[»] chr6 (8 HSPs)
chr6 (14-347)||(6920905-6921236)
chr6 (92-346)||(6954147-6954404)
chr6 (91-346)||(6942589-6942852)
chr6 (170-346)||(6934942-6935118)
chr6 (125-339)||(6947493-6947710)
chr6 (174-328)||(20770823-20770982)
chr6 (190-335)||(17369851-17369996)
chr6 (89-129)||(17370022-17370062)
[»] chr7 (12 HSPs)
chr7 (125-336)||(1985617-1985830)
chr7 (195-319)||(15571632-15571756)
chr7 (174-333)||(14076842-14077001)
chr7 (174-333)||(14386870-14387029)
chr7 (207-335)||(13416657-13416785)
chr7 (112-256)||(18514468-18514618)
chr7 (175-247)||(22064356-22064428)
chr7 (180-247)||(19350803-19350870)
chr7 (183-257)||(19597401-19597475)
chr7 (209-247)||(22524940-22524978)
chr7 (34-78)||(15571409-15571453)
chr7 (175-247)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (99-328)||(7663-7887)
[»] chr5 (1 HSPs)
chr5 (186-345)||(18964561-18964720)
[»] chr4 (5 HSPs)
chr4 (174-247)||(53775101-53775174)
chr4 (209-247)||(2911335-2911373)
chr4 (177-247)||(11970722-11970792)
chr4 (90-151)||(53775166-53775226)
chr4 (176-244)||(11981422-11981490)
[»] chr2 (4 HSPs)
chr2 (182-328)||(14515067-14515217)
chr2 (187-247)||(18908517-18908577)
chr2 (187-247)||(18913265-18913325)
chr2 (180-247)||(20712266-20712331)
[»] scaffold0097 (1 HSPs)
scaffold0097 (180-247)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (183-247)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 6920905 - 6921236
Alignment:
Q  14 agggtgcattctatcaatggacacataaaaactcaaaattagaacagtaaataaaattgagaaaattcacagttaataaaacagataatcattcaacaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6920905 agggtgcattctatcaatggacacataaaaactcaaaattagaacagtaaataaaatcgagaaaattcacagttaataaaacagataatcattcaacaat 6921004  T
Q  114 ataatcaaatcaaaaccatgatatgaaattatcacaaaatacattgtaccatacacaaactaacacaaattcaaacaagtaaatcatcgaacaaaaactt 213  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6921005 ataatcaaatcaaaaccatgatat--aattatcacaaaatacattgtaccatacacaagctaacacaaattcaaacaagtaaatcatcgaacaaaaactt 6921102  T
Q  214 actttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatctttcca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6921103 actttcaagaagtcgataccaagctttcaacatatcccttggcagtgaaccacaaaattttattggtactttcaattatctttgctctattatctttcca 6921202  T
Q  314 attatagagaattgcctggtctggtatattgata 347  Q
    ||||||||||||||||||||||||||||||||||    
T  6921203 attatagagaattgcctggtctggtatattgata 6921236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 92 - 346
Target Start/End: Original strand, 6954147 - 6954404
Alignment:
Q  92 aaacagataatcattcaa-caatataatcaaatcaaaaccatgatatgaaatta-tcacaaaatacattgtaccatacacaaactaacacaaattcaaac 189  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||| |||||||||||||||||    
T  6954147 aaacagataatcattcaaacaatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctaacacaaattcaaac 6954246  T
Q  190 aagtaaatcatcg-aacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaa 288  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  6954247 aagtaaatcatcggaaaaaaaacatactttcaagaagtcgataccaagctttcaacatatcccttggcagcggaccaccaaattttattggtacttttaa 6954346  T
Q  289 ttatctttgctctattatctttccaattatagagaattgcctggtctggtatattgat 346  Q
    || || |||||||||||| |||  |||||||||||||||| |||||| ||| ||||||    
T  6954347 ttctcgttgctctattattttttaaattatagagaattgcttggtctagtaaattgat 6954404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 91 - 346
Target Start/End: Original strand, 6942589 - 6942852
Alignment:
Q  91 aaaacagataatcattcaacaatataatcaaatcaaaaccatgatatg-aaattatcacaaaatacattgtaccatacacaaactaacacaaattcaaac 189  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||     
T  6942589 aaaacagataatcattcaacaatatattaaaatcaaaaccatgatatggaaataatcacaaaatacattctaccatacacaagctaacacaaattcaaaa 6942688  T
Q  190 -------aagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtac 282  Q
           | | |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942689 ccatgatatggaaataatcaaacaaaaacttactttcaagaagttgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtac 6942788  T
Q  283 tttcaattatctttgctctattatctttccaattatagagaattgcctggtctggtatattgat 346  Q
    ||| |||| |||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||    
T  6942789 ttttaattctctttgctctattatctttcaaattatagagaattgcttggtctagtaaattgat 6942852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 346
Target Start/End: Original strand, 6934942 - 6935118
Alignment:
Q  170 aaactaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaa 269  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||||| || ||||| ||    
T  6934942 aaactaacacaaattcaaacaagtaaatcattgaagagaaaattaccttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaa 6935041  T
Q  270 attttattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggtctggtatattgat 346  Q
     |||||  | |||||| |||| |||||||| |||||||| ||||||||||||||| ||| |||||||||| ||||||    
T  6935042 tttttaccgttacttttaattctctttgctgtattatctctccaattatagagaaatgcttggtctggtagattgat 6935118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 339
Target Start/End: Original strand, 6947493 - 6947710
Alignment:
Q  125 aaaaccatgatatgaaatta-tcacaaaatacattgtac--catacacaaactaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaa 221  Q
    ||||||||||| ||||| || ||||| |||| |||||||  |||||| |||||||| ||||| ||||||||||||||||| || | |||||||| |||||    
T  6947493 aaaaccatgatttgaaaataatcacacaatatattgtacatcatacataaactaactcaaatacaaacaagtaaatcatccaagagaaacttaccttcaa 6947592  T
Q  222 gaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatctttccaattataga 321  Q
     |  ||||| ||||||||||||||||||| |||||| || ||||| ||||||| |||||||||| |||| ||||| ||||||||||| ||||||||||||    
T  6947593 aatatcgatgccaagctttcaacatatccattggcactgaaccacaaaattttgttggtacttttaattctctttactctattatctctccaattataga 6947692  T
Q  322 gaattgcctggtctggta 339  Q
    ||| ||| ||||||||||    
T  6947693 gaaatgcttggtctggta 6947710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 20770982 - 20770823
Alignment:
Q  174 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagc-----tttcaacatatcccttggcagtggaccacca 268  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||| | ||||||||||| |     ||||||||||  |||| ||| |  |||||||    
T  20770982 taacacaaattcaaacaagtaaatcatcgaagaggaacttactttcaacaggtcgataccaaaccaaactttcaacataatccttagcactataccacca 20770883  T
Q  269 aattttattggtactttcaattatctttgctctattatctttccaattatagagaattgc 328  Q
    ||||| || ||||||||||||| |||||  ||||||||||||| |||||||||| |||||    
T  20770882 aatttcataggtactttcaattctctttagtctattatctttcaaattatagaggattgc 20770823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 17369996 - 17369851
Alignment:
Q  190 aagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaat 289  Q
    ||||||||||||||| |  ||||||||||||| |||| |||||||||||||||||||| ||||||| ||    |||   |||| ||| |||| |||||||    
T  17369996 aagtaaatcatcgaagagtaacttactttcaacaagtagataccaagctttcaacatagcccttggaagccttccaaataattctataggtattttcaat 17369897  T
Q  290 tatctttgctctattatctttccaattatagagaattgcctggtct 335  Q
    | ||||| ||||||||| | ||||||||||||||||| | ||||||    
T  17369896 tttctttactctattatttctccaattatagagaatttcttggtct 17369851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 17370062 - 17370022
Alignment:
Q  89 ataaaacagataatcattcaacaatataatcaaatcaaaac 129  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  17370062 ataaaatagataatcattcaacaatgcaatcaaatcaaaac 17370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 336
Target Start/End: Original strand, 1985617 - 1985830
Alignment:
Q  125 aaaaccatgatatgaaatta-tcacaaaatacattgtac-catacacaaactaacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaag 222  Q
    ||||||||||| ||||| || ||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  1985617 aaaaccatgatttgaaaataatcacacaatatattgtatacatacacaaactaacacaaattcaaacaagtaaatcatcgaagagaaacttaccttcaag 1985716  T
Q  223 aagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattatctttccaattatagag 322  Q
    || ||||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| |||| | | | ||||||||||| ||| |||||||||    
T  1985717 aaatcgataccaagctttcaacgtatcccttggcactgaaccacaaaattctattggtacttttaattctttctactctattatctctcctattatagag 1985816  T
Q  323 aattgcctggtctg 336  Q
    || ||| |||||||    
T  1985817 aaatgcttggtctg 1985830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 15571632 - 15571756
Alignment:
Q  195 aatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatct 294  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |  ||||| ||| |||||| |||| |||    
T  15571632 aatcatcgaacaaaaacttactttcaggaagtcgataccaagctttcaacatatcccctggcattggaccaacggatttttttgttacttttaattctct 15571731  T
Q  295 ttgctctattatctttccaattata 319  Q
    || ||||||||| | ||||||||||    
T  15571732 ttactctattatatctccaattata 15571756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 14077001 - 14076842
Alignment:
Q  174 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattt 273  Q
    ||||||| ||||||||| ||||||||||||| |  ||||||||||| | |||||||||||||||||||||||||   ||||| |    ||||| |||||     
T  14077001 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattc 14076902  T
Q  274 tattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggt 333  Q
    |||||||| ||| |||| ||||| ||||||||||| |||||||||||| |||||| ||||    
T  14076901 tattggtatttttaattctctttactctattatctctccaattatagataattgcttggt 14076842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 14387029 - 14386870
Alignment:
Q  174 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattt 273  Q
    ||||||| ||||||||| ||||||||||||| |  ||||||||||| | |||||||||||||||||||||||||   ||||| |    ||||| |||||     
T  14387029 taacacagattcaaacatgtaaatcatcgaagaggaacttactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattc 14386930  T
Q  274 tattggtactttcaattatctttgctctattatctttccaattatagagaattgcctggt 333  Q
    |||||||| ||| |||| ||||| ||||||||||| |||||||||||| |||||| ||||    
T  14386929 tattggtatttttaattctctttactctattatctctccaattatagataattgcttggt 14386870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 13416657 - 13416785
Alignment:
Q  207 aaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttgctctattat 306  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||   | |||||||||||| ||||| ||||| |||| ||||| |||||||||    
T  13416657 aaaacatactttcttgaagtcgataccaagctttcaacatatcccttggcgtcgaaccaccaaatttgattgggacttttaattctctttactctattat 13416756  T
Q  307 ctttccaattatagagaattgcctggtct 335  Q
    || ||| ||| ||| ||||| | ||||||    
T  13416757 ctctcctattgtagtgaattacttggtct 13416785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 18514468 - 18514618
Alignment:
Q  112 atataatcaaatcaaaaccatgatatg-aaattatcacaaaatacattgtac-catacacaaactaacacaaattcaaacaagtaaatcatcgaacaaaa 209  Q
    ||||||||||||||||||||||||||| |||| || |||  ||||||||||| |  |||| |  |||| |||||||||||||||||||||  |||||       
T  18514468 atataatcaaatcaaaaccatgatatgaaaataatgacacgatacattgtacacggacacgatttaactcaaattcaaacaagtaaatcacggaacaggg 18514567  T
Q  210 acttactttcaagaagtc----gataccaagctttcaacatatcccttggc 256  Q
    |||||||||| | |||||    |||| |||||| ||||||||| |||||||    
T  18514568 acttactttccacaagtctgtagatatcaagctctcaacatatgccttggc 18514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 22064428 - 22064356
Alignment:
Q  175 aacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||| ||  ||| ||||| |||||| ||||    
T  22064428 aacacaaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcata 22064356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 19350803 - 19350870
Alignment:
Q  180 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||| ||||||||  || | |||||||||||||||| || || || ||||||||||||||    
T  19350803 aaattcaaacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacata 19350870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 19597401 - 19597475
Alignment:
Q  183 ttcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggca 257  Q
    |||||||||||||||  | ||| | ||||||||||| ||  |||||| |||||||||||||||||| | ||||||    
T  19597401 ttcaaacaagtaaattgttgaaaagaaacttacttttaattagtcgaaaccaagctttcaacatattcattggca 19597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 22524940 - 22524978
Alignment:
Q  209 aacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||| || |||||||||||||||||    
T  22524940 aacttactttcaagaagttgaaaccaagctttcaacata 22524978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 15571409 - 15571453
Alignment:
Q  34 acacataaaaactcaaaattagaacagtaaataaaattgagaaaa 78  Q
    |||| ||||| |||||||||| |||||||||||||||||| ||||    
T  15571409 acacttaaaagctcaaaattaaaacagtaaataaaattgaaaaaa 15571453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 18982666 - 18982738
Alignment:
Q  175 aacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||| |||||||| |||||||||  | ||| | ||| ||||||||||  |||||| |||||||||||||||||    
T  18982666 aacaaaaattcaatcaagtaaatagttgaaaagaaatttactttcaactagtcgaaaccaagctttcaacata 18982738  T

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Target: scaffold0354 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 99 - 328
Target Start/End: Complemental strand, 7887 - 7663
Alignment:
Q  99 taatcattcaacaatataatcaaatcaaaaccatgatatgaaatta-tcacaaaatacattgtaccatacacaaactaacacaaattcaaacaagtaaat 197  Q
    ||||| || ||||||||||||||||||||||||| |||||||| || ||||| || ||| |||||     ||||||||||| ||||||||||||||||||    
T  7887 taatcgttgaacaatataatcaaatcaaaaccataatatgaaaataatcacacaagacaatgtac-----acaaactaacaaaaattcaaacaagtaaat 7793  T
Q  198 catcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtactttcaattatctttg 297  Q
     ||||| ||||| | ||| |||||||||||| |||||||||||| ||||||||||||||| || |||||  ||||| ||||||||||| |||| | |||     
T  7792 gatcgagcaaaa-cataccttcaagaagtcggtaccaagctttctacatatcccttggcattgaaccacggaatttgattggtacttttaattctattta 7694  T
Q  298 ctctattatctttccaattatagagaattgc 328  Q
    ||||||||||| || ||||||||| ||||||    
T  7693 ctctattatctctcaaattatagacaattgc 7663  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 345
Target Start/End: Original strand, 18964561 - 18964720
Alignment:
Q  186 aaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtacttt 285  Q
    |||||||||| ||||| || |  ||||||||||||| |||| |||| ||||||||||||||| ||||||| ||    |||  |  |||||   ||| |||    
T  18964561 aaacaagtaagtcatcaaagaggaacttactttcaacaagtagatatcaagctttcaacatagcccttggaagccttccaaaattttttacatgtatttt 18964660  T
Q  286 caattatctttgctctattatctttccaattatagagaattgcctggtctggtatattga 345  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||  ||||||||    
T  18964661 caattttctttactctattatctctccaattatagagaattgcttggtctcttatattga 18964720  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 53775174 - 53775101
Alignment:
Q  174 taacacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    ||||||||||||||||||||||||| | ||| |  ||||||||||||| | || ||||||||||||||||||||    
T  53775174 taacacaaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacata 53775101  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 2911373 - 2911335
Alignment:
Q  209 aacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  2911373 aacttactttcaagaagttgataccaagctttctacata 2911335  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 11970722 - 11970792
Alignment:
Q  177 cacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||||||  ||| | | |||||||||||||| ||  | | |||||||||||||||||    
T  11970722 cacaaattcaaacaagtaaattgtcgtagagaaacttactttcaacaatacaaaaccaagctttcaacata 11970792  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 53775226 - 53775166
Alignment:
Q  90 taaaacagataatcattcaacaatataatcaaatcaaaaccatgatatgaaattatcacaaa 151  Q
    ||||| ||| ||||||||||||||| |||||||||||||| || |||| |||||| ||||||    
T  53775226 taaaagagagaatcattcaacaatacaatcaaatcaaaactatcatat-aaattaacacaaa 53775166  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 11981422 - 11981490
Alignment:
Q  176 acacaaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaac 244  Q
    ||||||||||||||||||||||  | | | | |||||||||||||| ||  ||| ||||||||||||||    
T  11981422 acacaaattcaaacaagtaaattgttgtagagaaacttactttcaacaatacgaaaccaagctttcaac 11981490  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 14515217 - 14515067
Alignment:
Q  182 attcaaacaagtaaatcatcgaacaaaaacttactttcaagaa----gtcgataccaagctttcaacatatcccttggcagtggaccaccaaattttatt 277  Q
    ||||||||||||||||||| |||||  |||||||||| || ||    ||||||| ||| |||||||||||| |||||||  ||  |||   |||| ||||    
T  14515217 attcaaacaagtaaatcattgaacaggaacttacttttaacaagtctgtcgatatcaaactttcaacatatgccttggccctgctccatgtaattctatt 14515118  T
Q  278 ggtactttcaattatctttgctctattatctttccaattatagagaattgc 328  Q
    ||| ||||  ||| ||||| ||||||||||||||||||| || ||||||||    
T  14515117 ggtgcttttgattctctttactctattatctttccaattgtaaagaattgc 14515067  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18908517 - 18908577
Alignment:
Q  187 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    ||||| |||||||||||| |||||||||||||||||| || || |||||||||||||||||    
T  18908517 aacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacata 18908577  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 18913265 - 18913325
Alignment:
Q  187 aacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    ||||| |||||||| ||| | |||||||||||||||| || ||||||||||||||||||||    
T  18913265 aacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacata 18913325  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 20712266 - 20712331
Alignment:
Q  180 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||||||  || |  ||||||||||||| |||| || ||||||||||| |||||    
T  20712266 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaagctttcgacata 20712331  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 16105 - 16170
Alignment:
Q  180 aaattcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    |||||||||||||||||||||  || |  ||||||||||||| |||| || ||||||||||| |||||    
T  16105 aaattcaaacaagtaaatcat--aagaggaacttactttcaacaagttgaaaccaagctttcgacata 16170  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 27618791 - 27618727
Alignment:
Q  183 ttcaaacaagtaaatcatcgaacaaaaacttactttcaagaagtcgataccaagctttcaacata 247  Q
    ||||||||||||| || || || |  |||||||||||||||| | || |||||||||||||||||    
T  27618791 ttcaaacaagtaattcgtcaaataggaacttactttcaagaaattgaaaccaagctttcaacata 27618727  T

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