View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4161_high_6 (Length: 311)
Name: NF4161_high_6
Description: NF4161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4161_high_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 42195676 - 42195379
Alignment:
| Q |
18 |
cagcatcgctaatagtggttaaaccacccattcctgatccaactagaactcctattcttgttttgtccatctgttagaacaacaacaatttcggttcaaa |
117 |
Q |
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| T |
42195676 |
cagcatcgctaatagtggttaaactacccattcctgatccaactagtactcctattcttgttttgtccatctgttagaacaacaacaatttcggttcaaa |
42195577 |
T |
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| Q |
118 |
agaataaagatacgaaaaactcaatcaacttaccccttattgcagttcctttctattatttccaacttaagatttaatgtatacaacatgttcttaaata |
217 |
Q |
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| T |
42195576 |
agaataaagatacgaaaaactcaatcaacttaccccttattgcagttcctttctattatttccaacttaagatttaatgtatacaacatgttcttaaata |
42195477 |
T |
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| Q |
218 |
ctaatcgtaattagtaac----tatgagtcatactcattggtacctttnnnnnnntacctttgacttacattgttaaggacttcatttccaagattag |
311 |
Q |
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| T |
42195476 |
ctaatcgtaattagtaactatatatgagtcatactcattggtacctttaaaaaaatacctttgacttacattgttaaggacttcatttccaagattag |
42195379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 42185995 - 42185920
Alignment:
| Q |
18 |
cagcatcgctaatagtggttaaaccacccattcctgatccaactagaactcctattcttgttttgtccatctgtta |
93 |
Q |
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| T |
42185995 |
cagcattgttaaaagtggatacacctcccattcctgatcctactagaactcctattcttgttttgtccatctgtta |
42185920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 42201374 - 42201337
Alignment:
| Q |
273 |
tttgacttacattgttaaggacttcatttccaagatta |
310 |
Q |
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| T |
42201374 |
tttgacttaccttgttaaggacttcatatccaagatta |
42201337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 35052249 - 35052221
Alignment:
| Q |
109 |
cggttcaaaagaataaagatacgaaaaac |
137 |
Q |
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| T |
35052249 |
cggttcaaaagaataaagatacgaaaaac |
35052221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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