View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4161_high_7 (Length: 307)

Name: NF4161_high_7
Description: NF4161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4161_high_7
NF4161_high_7
[»] chr3 (9 HSPs)
chr3 (22-207)||(44792917-44793101)
chr3 (25-156)||(44797855-44797986)
chr3 (25-156)||(44801250-44801381)
chr3 (67-162)||(44789413-44789509)
chr3 (239-293)||(3792424-3792478)
chr3 (55-156)||(44805742-44805843)
chr3 (239-293)||(3830604-3830658)
chr3 (32-172)||(44787134-44787274)
chr3 (115-157)||(44784308-44784350)
[»] chr5 (1 HSPs)
chr5 (205-293)||(11888100-11888188)
[»] scaffold0141 (1 HSPs)
scaffold0141 (205-293)||(16453-16541)
[»] chr7 (1 HSPs)
chr7 (205-293)||(8425109-8425197)
[»] chr1 (1 HSPs)
chr1 (205-293)||(52242804-52242892)
[»] chr4 (2 HSPs)
chr4 (235-293)||(7362055-7362113)
chr4 (216-293)||(48229494-48229571)
[»] scaffold0267 (1 HSPs)
scaffold0267 (239-293)||(7366-7420)
[»] chr2 (1 HSPs)
chr2 (241-293)||(13698224-13698276)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 44793101 - 44792917
Alignment:
Q  22 catcatcaatggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtctt 121  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44793101 catcgtcaatggtagacgatgaattgcctcaggagtttctggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtctt 44793002  T
Q  122 ctcaatgaacatacctccacgtttactcgttcgtatcctacactattcatcatcttctttttgtttttagaccaatattaactaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  44793001 ctcaatgaacatacctccacgtttactcgttcgtatcctacactattcatcatcttctttttgttttt-taccaatattaactaat 44792917  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 44797986 - 44797855
Alignment:
Q  25 catcaatggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctc 124  Q
    |||||| |||||| |||||||| ||||   |||||||| ||||||||| |||||||| ||| |||||||||| |||||||||||||||||| ||||||||    
T  44797986 catcaacggtagatgatgaatttcctccaaagtttttgcaacatctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctc 44797887  T
Q  125 aatgaacatacctccacgtttactcgttcgta 156  Q
    |||||||||||| |||||||||||||||||||    
T  44797886 aatgaacatacccccacgtttactcgttcgta 44797855  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 44801381 - 44801250
Alignment:
Q  25 catcaatggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctc 124  Q
    |||||| |||||| |||||||| ||||   ||||  |||||| | | | |||||| |||||||||||||||| |||||| ||||| | ||| || |||||    
T  44801381 catcaacggtagatgatgaatttcctcccaagttcctggaacctttcatcttgcgtggcctacgattggatctcattgagcctggccatgtcgttttctc 44801282  T
Q  125 aatgaacatacctccacgtttactcgttcgta 156  Q
    ||||||||||||||||||||||||||||||||    
T  44801281 aatgaacatacctccacgtttactcgttcgta 44801250  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 44789509 - 44789413
Alignment:
Q  67 atctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctc-aatgaacatacctccacgtttactcgttcgtatcctac 162  Q
    |||||| |||||| |||||||||||||||| |||| | |||||||||||  ||||||| ||||| ||||||  ||||||||||||||||||||||||    
T  44789509 atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaaatgagcataccctcacgtttactcgttcgtatcctac 44789413  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 3792478 - 3792424
Alignment:
Q  239 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3792478 gttgctgttataggctagaattctgatatgcttatgtttgttttgctttagtttg 3792424  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 44805843 - 44805742
Alignment:
Q  55 agtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaacatacctccacgtttactcgttcg 154  Q
    ||||| |||||||||||| |||||| |||||||| || |||  |||||| ||||| |||||  | ||| ||||||||||||| |||||||||||||||||    
T  44805843 agtttctggaacatctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacccccacgtttactcgttcg 44805744  T
Q  155 ta 156  Q
    ||    
T  44805743 ta 44805742  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 3830658 - 3830604
Alignment:
Q  239 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  3830658 gttgctgttataggctagaattcttatatgcttttgtttgttttgctttagtttg 3830604  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 44787274 - 44787134
Alignment:
Q  32 ggtagacgatgaattgcctcaggagtttttggaacatctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgttgtcttctcaatgaac 131  Q
    ||||||| |||||||||||||||||||||||| |||||||  | | || ||| ||||  | |||| |||||| ||||| ||| | || |||||||||||     
T  44787274 ggtagacaatgaattgcctcaggagtttttgggacatctagtcgtacgtggcttacgccttgatctcattgagcctggccgtatcgttttctcaatgaag 44787175  T
Q  132 atacctccacgtttactcgttcgtatcctacactattcatc 172  Q
    ||||||||   |||||| ||||||||| ||| || ||||||    
T  44787174 atacctcccaatttacttgttcgtatcttactcttttcatc 44787134  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 44784350 - 44784308
Alignment:
Q  115 ttgtcttctcaatgaacatacctccacgtttactcgttcgtat 157  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  44784350 ttgtcttctcaatgaagatacctccacgtttactcgttcgtat 44784308  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 11888188 - 11888100
Alignment:
Q  205 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11888188 aatatttgtagaagtacatccgaagcttataaaagtttctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 11888100  T

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Target: scaffold0141 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 16541 - 16453
Alignment:
Q  205 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16541 aatatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttg 16453  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 8425109 - 8425197
Alignment:
Q  205 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8425109 aatatttgtagaagtacatccaaagcttataaaagtttttgttataggctagaattctaatatgcttctgtttgttttgccttagtttg 8425197  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 52242892 - 52242804
Alignment:
Q  205 aatatttgtagaagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  52242892 aatatttgtagaagtacatccaaaacttataaaagtttctgttatagactagaattctaatatgcttctgtttgttttgccttagtttg 52242804  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 7362113 - 7362055
Alignment:
Q  235 aatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7362113 aatagttgctgttgtaggctagaattctaatatgcttatgtttgttttgccttagtttg 7362055  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 48229494 - 48229571
Alignment:
Q  216 aagtatatccaaagcttataatagttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  48229494 aagtatatccaaagcttttgatagttactgttataggctagaattctaatttgcttctgcttgttttgccttagtttg 48229571  T

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Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 7420 - 7366
Alignment:
Q  239 gttgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  7420 gttgttgttataggctagaattcttatatgcttttgtttgttttgctttagtttg 7366  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 13698224 - 13698276
Alignment:
Q  241 tgctgttataggctagaattctaatatgcttatgtttgttttgccttagtttg 293  Q
    |||| ||||||||||||||| | |||||||| |||||||||||| ||||||||    
T  13698224 tgctcttataggctagaattttgatatgcttttgtttgttttgctttagtttg 13698276  T

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