View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4161_low_2 (Length: 645)
Name: NF4161_low_2
Description: NF4161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4161_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 34851889 - 34851473
Alignment:
| Q |
9 |
gagtagcaaaggcataatactaatgatagtggccatattttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
108 |
Q |
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| T |
34851889 |
gagtaacaaagacataatactaatgatagtggccattttttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
34851790 |
T |
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| Q |
109 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
208 |
Q |
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| T |
34851789 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
34851690 |
T |
|
| Q |
209 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
308 |
Q |
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| T |
34851689 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
34851590 |
T |
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| Q |
309 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaatttctcaggtacttaaacgagg |
408 |
Q |
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| T |
34851589 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaattcctcaggtaattaaacgagg |
34851490 |
T |
|
| Q |
409 |
gctgaaaaaggatgaga |
425 |
Q |
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| T |
34851489 |
gcttaaaaaggatgaga |
34851473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 441 - 626
Target Start/End: Complemental strand, 34851485 - 34851300
Alignment:
| Q |
441 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctttttcttggggaataattttcttgaccaccatagtagattgaagagctg |
540 |
Q |
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| T |
34851485 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctgtttcttggggaataattttcttgaccaccatagtagattgaagagctg |
34851386 |
T |
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| Q |
541 |
tagtagctaggttccattgtctcattctgataattggtacaagtattcttgttataagagatgccatcactaggagtagtgcctaa |
626 |
Q |
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| T |
34851385 |
tagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagatgccatcactaggagtagtgcctaa |
34851300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 3511696 - 3511619
Alignment:
| Q |
320 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatttctcaggt |
396 |
Q |
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| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaattcctcaggt |
3511619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 3651160 - 3651239
Alignment:
| Q |
116 |
taccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaac |
195 |
Q |
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| T |
3651160 |
taccttgccaccagtcgcctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaac |
3651239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 3652164 - 3652228
Alignment:
| Q |
516 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtac |
580 |
Q |
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| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtac |
3652228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 3512626 - 3512532
Alignment:
| Q |
113 |
tcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaa |
207 |
Q |
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|||||||| ||||||||| || |||||||||||| | | |||||||| |||| ||||| ||| || | |||||||||| |||| |||| ||||| |
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| T |
3512626 |
tcctacctagccaccagtctccccttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaa |
3512532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 31120837 - 31120764
Alignment:
| Q |
504 |
ataattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
574 |
Q |
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||||||||||||||||||||| |||||||| || |||||||| || || |||| ||||||||||||||||| |
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| T |
31120837 |
ataattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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