View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_high_16 (Length: 211)
Name: NF4162_high_16
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 9358928 - 9358747
Alignment:
| Q |
14 |
caaagggagattctttcttgttttgatactgaagttgcaatacaccaatgagtattgtatcaagaaacacaaagatggcatggcatgggattgaagggat |
113 |
Q |
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| T |
9358928 |
caaagggagattctttcttgttttgatactgaagttgcaatacaccaatgagtattgtatcgagaaacacaaagatggcatggcatgggattgaagggat |
9358829 |
T |
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| Q |
114 |
gaagtcttgatccttcaaagtagttggtaatctacaaagtccaattagatatataaaaattagggcttttgctatactttta |
195 |
Q |
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| T |
9358828 |
gaagtcttgatccttcaaagtagttggtaatctacaaagtccaattagatatataaaaattagggcttttgctatactttta |
9358747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9325389 - 9325323
Alignment:
| Q |
14 |
caaagggagattctttcttgttttgatactgaagttgcaatacaccaatgagtattgtatcaagaaa |
80 |
Q |
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| T |
9325389 |
caaagggagatcctttcttgttttggtacttaacttgcaatgcaccacagagtaatgcatcaagaaa |
9325323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9372111 - 9372045
Alignment:
| Q |
14 |
caaagggagattctttcttgttttgatactgaagttgcaatacaccaatgagtattgtatcaagaaa |
80 |
Q |
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| T |
9372111 |
caaagggagatcctttcttgttttggtacttaacttgcaatgcaccacagagtaatgcatcaagaaa |
9372045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9379868 - 9379802
Alignment:
| Q |
14 |
caaagggagattctttcttgttttgatactgaagttgcaatacaccaatgagtattgtatcaagaaa |
80 |
Q |
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| T |
9379868 |
caaagggagatcctttcttgttttggtacttaacttgcaatgcaccacagagtaatgcatcaagaaa |
9379802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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