View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_high_4 (Length: 392)
Name: NF4162_high_4
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 39700151 - 39699766
Alignment:
| Q |
1 |
caaattgtttgcaagaacatttgatacgttgcgacgtgcatttagtagtgtatatgagttttgacgatacgtaccctctttaaaacaaacaaaatagact |
100 |
Q |
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| T |
39700151 |
caaattgtttgcaagaacatttgatacgttgtgacgtgtatttagtagtgtatatgagtttcgacgatacataccctctttaaaacaaacaaaatagact |
39700052 |
T |
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| Q |
101 |
aatatttcatgagaatatgagtatgaatcataactgaaataatcattattaatcatagtctatttaccttttagtcaaatttcagattattatgatctct |
200 |
Q |
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| T |
39700051 |
aatatttcatgagaatatgagtatgaatcataactgaaataatcattattaatcatagtctatttaccttttaatcaaatttcagattattatgatctct |
39699952 |
T |
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| Q |
201 |
ttctcgtaaaaatcatgatatcg------aaacggaag--nnnnnnnnncttttgatgtgtaaagtgagtgcataatgttgatgagagttcaaagatgaa |
292 |
Q |
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| T |
39699951 |
ttcttgtaaaaatcatgatatcgaggttaaaacggaagaagaaaaaaaacttttgatgtgtaaagtgagtgcataatgttgatgagagttcaaagatgaa |
39699852 |
T |
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| Q |
293 |
aggaagaagagataccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatgtgcttctttt |
378 |
Q |
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| T |
39699851 |
aggaagaagagataccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatctgcttctttt |
39699766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 39931604 - 39931704
Alignment:
| Q |
278 |
gagttcaaagatgaaaggaagaagagataccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatgtgcttcttt |
377 |
Q |
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| T |
39931604 |
gagttaaaagatgaaaggaaaaagagagaccaatgaagaaaggggaacttatccaaccgccacgcttgctcccattacttaagctctcatctgcttcttt |
39931703 |
T |
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| Q |
378 |
t |
378 |
Q |
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| T |
39931704 |
t |
39931704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 39690728 - 39690650
Alignment:
| Q |
300 |
agagataccaatgaagaaagggaaacttatccaaccaccacgcttgctcccaatactcaaactctcatgtgcttctttt |
378 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
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| T |
39690728 |
agagagaccaatgaagaaagggaaacttatccaaccaccacgtttgctcccaatactcaagctctcatctgcttctttt |
39690650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 39936985 - 39937057
Alignment:
| Q |
278 |
gagttcaaagatgaaaggaagaagagata--ccaatgaagaaagggaaacttatccaaccaccacgcttgctc |
348 |
Q |
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| T |
39936985 |
gagttaaaagatgaaagtaaaaagagagaaaccaatgaagaaggggaaacttatccaaccgccacgcttgctc |
39937057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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