View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4162_high_5 (Length: 357)

Name: NF4162_high_5
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4162_high_5
NF4162_high_5
[»] chr3 (2 HSPs)
chr3 (9-203)||(35775739-35775933)
chr3 (270-347)||(35775595-35775672)
[»] chr1 (4 HSPs)
chr1 (272-350)||(16426366-16426444)
chr1 (272-324)||(3387615-3387667)
chr1 (273-314)||(30883156-30883197)
chr1 (270-326)||(35677736-35677792)
[»] chr5 (2 HSPs)
chr5 (272-335)||(4111966-4112029)
chr5 (293-336)||(41815783-41815826)
[»] scaffold0012 (1 HSPs)
scaffold0012 (272-324)||(209151-209203)
[»] chr4 (1 HSPs)
chr4 (270-314)||(35530033-35530077)
[»] chr2 (6 HSPs)
chr2 (272-324)||(41848979-41849031)
chr2 (270-333)||(16661325-16661388)
chr2 (272-324)||(38783760-38783812)
chr2 (272-337)||(17651206-17651271)
chr2 (303-344)||(44650139-44650180)
chr2 (64-108)||(26576433-26576477)
[»] chr8 (4 HSPs)
chr8 (272-323)||(13097405-13097456)
chr8 (272-324)||(28869811-28869863)
chr8 (275-324)||(28867248-28867297)
chr8 (272-324)||(18393701-18393753)
[»] chr7 (2 HSPs)
chr7 (275-337)||(9730060-9730122)
chr7 (273-314)||(43837341-43837382)
[»] chr6 (1 HSPs)
chr6 (272-324)||(2602050-2602102)
[»] scaffold0891 (1 HSPs)
scaffold0891 (270-329)||(2433-2491)
[»] scaffold1723 (1 HSPs)
scaffold1723 (275-324)||(489-538)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 35775933 - 35775739
Alignment:
Q  9 aattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttgttgcggtgtccg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35775933 aattattcccttcaaaggtaagttagtatctctttctgattgttttctgcatatatatgaagcacggacacatctatgactagacttgttgcggtgtccg 35775834  T
Q  109 caacttgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgagtttagaagtaaaatccaatgattacaacattttagc 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35775833 caacctgtatgacactccttcgacacatctcatatatatctgtaagagtcaaagatgtgtttagaagtaaaatccaatgattacaacattttagc 35775739  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 35775672 - 35775595
Alignment:
Q  270 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35775672 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagtggtgtcaatgtcctttg 35775595  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 16426444 - 16426366
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtcaatgtcctttgctt 350  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| |||||||||| | |||||||||| |||||| |||||    
T  16426444 atgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 3387667 - 3387615
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  3387667 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 3387615  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 30883156 - 30883197
Alignment:
Q  273 tgtatgtattttgatactcgatttagatcttttataaataat 314  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  30883156 tgtatatattttgattctcgatttagatcttttatcaataat 30883197  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 35677792 - 35677736
Alignment:
Q  270 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatg 326  Q
    |||||||| ||||||||| ||| ||| |||| |||||| ||||| ||||||||||||    
T  35677792 acatgtatatattttgattctcaattcagattttttatgaataaattaatatatatg 35677736  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 4112029 - 4111966
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgt 335  Q
    |||||||||||||||| ||| |||||||||||||||| |||| |||||||||| | ||||||||    
T  4112029 atgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 41815783 - 41815826
Alignment:
Q  293 atttagatcttttataaataatttaatatatatgcagcggtgtc 336  Q
    |||| |||||||||||||||| |||||||||||| |||||||||    
T  41815783 atttggatcttttataaataaattaatatatatgtagcggtgtc 41815826  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 209203 - 209151
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  209203 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 209151  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 35530077 - 35530033
Alignment:
Q  270 acatgtatgtattttgatactcgatttagatcttttataaataat 314  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  35530077 acatgtatatattttgattctcgatttagatcttttataaataat 35530033  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 41849031 - 41848979
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||||||||||||||| ||| |||||||| |||||||||||| ||||||||||    
T  41849031 atgtatgtattttgattctcaatttagatattttataaataaattaatatata 41848979  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 16661325 - 16661388
Alignment:
Q  270 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggt 333  Q
    ||||||||||||| |||| ||| |||||||||||||||| || | |||||||||||| ||||||    
T  16661325 acatgtatgtattctgattctcaatttagatcttttatacatgaattaatatatatgtagcggt 16661388  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 38783760 - 38783812
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||    
T  38783760 atgtatgtattttgattctcaattcagatattttataaataaattaatatata 38783812  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 17651271 - 17651206
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 337  Q
    |||||||||||||| |  |  ||||||||||| ||||||||| ||||||||||  |||||||||||    
T  17651271 atgtatgtattttggtttttaatttagatcttatataaataaattaatatatagccagcggtgtca 17651206  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 44650139 - 44650180
Alignment:
Q  303 tttataaataatttaatatatatgcagcggtgtcaatgtcct 344  Q
    ||||||||||| |||||||||||| ||| |||||||||||||    
T  44650139 tttataaataaattaatatatatgtagcagtgtcaatgtcct 44650180  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 26576477 - 26576433
Alignment:
Q  64 tatgaagcacggacacatctatgactagacttgttgcggtgtccg 108  Q
    |||||||||||||||| |||| |||||||| ||| ||||||||||    
T  26576477 tatgaagcacggacacctctaggactagacgtgtcgcggtgtccg 26576433  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 13097456 - 13097405
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatat 323  Q
    |||||||||||||||| ||| |||||||| |||||||||||| |||||||||    
T  13097456 atgtatgtattttgattctcaatttagatattttataaataaattaatatat 13097405  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 28869863 - 28869811
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28869863 atgtatgtattttgattctcaatttaaatattttataaataaattaatatata 28869811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 28867297 - 28867248
Alignment:
Q  275 tatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    ||||||||||||| ||| ||||| || |||||||||||| ||||||||||    
T  28867297 tatgtattttgattctcaatttaaatgttttataaataaattaatatata 28867248  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 18393701 - 18393753
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    ||||||||||| |||| ||| |||||||| |||||||| ||| ||||||||||    
T  18393701 atgtatgtattatgattctcaatttagatattttataagtaaattaatatata 18393753  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 9730060 - 9730122
Alignment:
Q  275 tatgtattttgatactcgatttagatcttttataaataatttaatatatatgcagcggtgtca 337  Q
    ||||||||||| | ||  ||||||||||||||||||||| |||||||||| | ||||||||||    
T  9730060 tatgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtca 9730122  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 43837341 - 43837382
Alignment:
Q  273 tgtatgtattttgatactcgatttagatcttttataaataat 314  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||    
T  43837341 tgtatatattttgattctcaatttagatcttttataaataat 43837382  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 2602102 - 2602050
Alignment:
Q  272 atgtatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    |||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||    
T  2602102 atgtttgtattttgattcttaatttagatcttttataaataaattaatatata 2602050  T

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Target: scaffold0891 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 2433 - 2491
Alignment:
Q  270 acatgtatgtattttgatactcgatttagatcttttataaataatttaatatatatgcag 329  Q
    ||||||| ||||||||||| || |||||||||| |||| ||||| |||||||||||||||    
T  2433 acatgtacgtattttgataatcaatttagatctcttat-aataaattaatatatatgcag 2491  T

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Target: scaffold1723 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 489 - 538
Alignment:
Q  275 tatgtattttgatactcgatttagatcttttataaataatttaatatata 324  Q
    ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||    
T  489 tatgtattttgattcttaattaagatcttttataaataaattaatatata 538  T

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