View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_high_6 (Length: 319)
Name: NF4162_high_6
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 24838721 - 24838425
Alignment:
| Q |
8 |
caagaccaaatgaagcattaacttttaggatatcaaatttggtactttgctttccttttattgtgttgctttggcagaatatgcacgtagtattattata |
107 |
Q |
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| T |
24838721 |
caagaccaaatgaagcattaacttttaggatatcaaatttggtactttgttttccttttattgtgttgctttggcagaatatgcacgtagtattattata |
24838622 |
T |
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| Q |
108 |
tatatgctggttaaacaaaatgattgagttggcttctacttattatatatgctggttaaacaatatgattgctttggcttctaatgcacgtaggtattgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24838621 |
tatatgctggttaaacaaaatgattgagttggcttctacttattatatatgctggttaaacaatatgattgctttggcttctaatgcacgtaggtattgt |
24838522 |
T |
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| Q |
208 |
tatgcatattttgtaactcaaattgattgttaaacaaggtattgctatgatatagtccatagattttgtaacttttctataaattataaatgaatct |
304 |
Q |
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| T |
24838521 |
tatgcatattttgtaactcaaaatgactgttaaacaaggtattgctatgatatagtccatagattttgtaacttttctataaattataaatgaatct |
24838425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 24263652 - 24263691
Alignment:
| Q |
106 |
tatatatgctggttaaacaaaatgattgagttggcttcta |
145 |
Q |
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| T |
24263652 |
tatagatgctggttagacaaaatgattgagttggcttcta |
24263691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 1188259 - 1188219
Alignment:
| Q |
27 |
aacttttaggatatcaaatttggtactttgctttcctttta |
67 |
Q |
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|||||||||||||||||||||||||||||| | |||||||| |
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| T |
1188259 |
aacttttaggatatcaaatttggtactttgttctcctttta |
1188219 |
T |
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