View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4162_low_10 (Length: 251)
Name: NF4162_low_10
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_10 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 39700406 - 39700166
Alignment:
| Q |
11 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39700406 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
39700307 |
T |
|
| Q |
111 |
gctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39700306 |
gctctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatca |
39700207 |
T |
|
| Q |
211 |
acaacatnnnnnnnntatgatcatccttttagcatttatac |
251 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |
|
|
| T |
39700206 |
acaacataaaaaaaatatgatcatccttttaacatttatac |
39700166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 39691214 - 39691015
Alignment:
| Q |
14 |
agaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgct |
113 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||| | ||| |||||| | | |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39691214 |
agaatgagccaaagaaagagtcagcaaggattgctgcaacaagtggaaatagacttgtgcttccaacaacaacgtttacaatctgagctgcattgatgct |
39691115 |
T |
|
| Q |
114 |
ctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatcaaca |
213 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| || || ||||||| | ||||| ||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
39691114 |
cttgatattgaattcacttataagatatacaatcaagtttccaacaattccagtgcttgcaagtgacaaccccgttatcatacctataa-ttaatcaaca |
39691016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 39931003 - 39931202
Alignment:
| Q |
14 |
agaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgatgct |
113 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || | | ||| |||| | ||| ||||||||| ||||| ||| |||||||| |||| ||||||| |
|
|
| T |
39931003 |
agaaagaaccaaagaaagaatcagcaacgattgcggccactactggaaatatactggtgcttccaacgacaacatttgaaatttgagttgcagtgatgct |
39931102 |
T |
|
| Q |
114 |
ctttatattgaattcttttataagatatacaatcaaattccccccaattcctgcacttgctagtgacaaccccgctaccatacctataatttaatcaaca |
213 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| || || ||||||| | ||| | ||||||| |||||||| |||||||||| |||| |||||| |
|
|
| T |
39931103 |
ctttatattgaattctcttgtaagatatacaatcaagtttccaacaattccggtgcttccaagtgacatccccgctatcatacctatagtttattcaaca |
39931202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 39935259 - 39935391
Alignment:
| Q |
11 |
cagagaaagagccaaagaaagaatcagcaaggattgcagcaatgattggtaatagattggagcttccaacaacaacgtttacaatttgagctgcattgat |
110 |
Q |
| |
|
||||||| || |||||||| |||||||||| ||||| ||||||| | | ||| ||| |||||| | ||||| ||||||||| ||||| ||| |||| |
|
|
| T |
39935259 |
cagagaaggatccaaagaatgaatcagcaacaattgcggcaatgaatagaaatt--ttgatgcttccgataacaatgtttacaatctgagcagcaatgat |
39935356 |
T |
|
| Q |
111 |
gctctttatattgaattcttttataagatatacaa |
145 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
39935357 |
gctctttatattgaattcttgtataagatatacaa |
39935391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 38187169 - 38187115
Alignment:
| Q |
62 |
atagattggagcttccaacaacaacgtttacaatttgagctgcattgatgctctt |
116 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
38187169 |
atagatcggagcttccttcaacaaggtttacaatttgagttgcagtgatgctctt |
38187115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University