View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_low_15 (Length: 239)
Name: NF4162_low_15
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37705229 - 37705453
Alignment:
| Q |
1 |
ttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaa |
100 |
Q |
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| T |
37705229 |
ttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaa |
37705328 |
T |
|
| Q |
101 |
aagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcatggaccacatttcttata |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37705329 |
aagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccacctttataattggttcatcatggaccacatttcttata |
37705428 |
T |
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| Q |
201 |
tttacgactaagtgggtgacttgat |
225 |
Q |
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| T |
37705429 |
tttacgactaagtgggtgacttgat |
37705453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 37437931 - 37438116
Alignment:
| Q |
1 |
ttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| ||||||||||| |||||||||||| |
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| T |
37437931 |
ttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaatgcactgagcatataaa |
37438030 |
T |
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| Q |
101 |
aagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcatgga |
186 |
Q |
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| T |
37438031 |
aagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcatgga |
37438116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
| Q |
77 |
aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt |
176 |
Q |
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||||||||||| |||||| |||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
37700646 |
aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt |
37700745 |
T |
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| Q |
177 |
tcatcatg |
184 |
Q |
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|||||||| |
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| T |
37700746 |
tcatcatg |
37700753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
| Q |
3 |
ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa |
102 |
Q |
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|||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | |||||||||||| |
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| T |
16840796 |
ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa |
16840697 |
T |
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| Q |
103 |
gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt |
176 |
Q |
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|||||||||| | |||||| |||| | |||||||||||||||||||||| ||| ||||| ||||||| |||| |
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| T |
16840696 |
gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt |
16840622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
| Q |
1 |
ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta |
68 |
Q |
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||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| ||||||| |
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| T |
8266027 |
tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta |
8265959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
| Q |
33 |
atttctttaaatttataattttttcaaagtttgtta |
68 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
21595162 |
atttctttaaattcataattttttcaaagtttgtta |
21595127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
| Q |
2 |
tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta |
68 |
Q |
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|||| |||||||||||||||||| | || | |||| ||||||||||||||||| ||||||||||||| |
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| T |
2125101 |
ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta |
2125168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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