View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_low_16 (Length: 238)
Name: NF4162_low_16
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 43251243 - 43251464
Alignment:
| Q |
17 |
agctgaaacattgggttttaagagttatgcaccagcataccttagtcctcaagcaacaggaaaaaaccttcttattggagcaaattttgcttcagctgca |
116 |
Q |
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| T |
43251243 |
agctgaaacattgggttttaagagttatgcaccagcataccttagtcctcaagcaacaggaaaaaaccttcttattggagcaaattttgcttcagctgca |
43251342 |
T |
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| Q |
117 |
tctggttatgatgaaaaggctgctatcttgaatgtaagtttgtgatgaacaacgcaaacatgcgcactagaagattcgtcctttttaactcttcnnnnnn |
216 |
Q |
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| T |
43251343 |
tctggttatgatgaaaaggctgctatcttgaatgtaagtttgtgatgaacaacgcaaacatgcgcactagaagattcatcctttttaactcttctttttt |
43251442 |
T |
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| Q |
217 |
ncacagcacgcaattccattgt |
238 |
Q |
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| T |
43251443 |
tcacagcacgcaattccattgt |
43251464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 4767897 - 4767757
Alignment:
| Q |
16 |
cagctgaaacattgggttttaagagttatgcaccagcataccttagtcctcaagcaacaggaaaaaaccttcttattggagcaaattttgcttcagctgc |
115 |
Q |
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||||||||||| | ||||||| ||||| |||||| ||||| |||||||| || ||| |||| || ||||| ||| |||||||||| || ||||||||||| |
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| T |
4767897 |
cagctgaaacacttggttttacgagttttgcacctgcatatcttagtccacaggcatcagggaagaacctccttcttggagcaaacttcgcttcagctgc |
4767798 |
T |
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| Q |
116 |
atctggttatgatgaaaaggctgctatcttgaatgtaagtt |
156 |
Q |
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| T |
4767797 |
atctggttatgatgaaaaggctgctacgttgaatgtaagtt |
4767757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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