View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4162_low_19 (Length: 236)
Name: NF4162_low_19
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27731847 - 27732067
Alignment:
| Q |
1 |
tcaattcatgagaactctgttccatcccaggtcctccgccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaat |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27731847 |
tcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaat |
27731946 |
T |
|
| Q |
101 |
cttgaatatcagccacaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacgttgcttgaaactttgaacttttta |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27731947 |
cttgaatatcagccgcaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccacattgcttgaaactttgaacttttta |
27732046 |
T |
|
| Q |
201 |
tgtacctgaccatgatcacca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27732047 |
tgtacctgaccatgatcacca |
27732067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 21249705 - 21249569
Alignment:
| Q |
1 |
tcaattcatgagaactctgttccatcccaggtcctccgccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaat |
100 |
Q |
| |
|
||||||||| | ||||||||||||||||| | | || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
21249705 |
tcaattcattaaaactctgttccatcccattttcgccaccttcattatttttcttcttttcttcatcttggctgcattgccagaccttgttgtctttaat |
21249606 |
T |
|
| Q |
101 |
cttgaatatcagccacaaactctttttactgttattat |
138 |
Q |
| |
|
|||| ||| || ||||||||||||||||||||||| |
|
|
| T |
21249605 |
cttggatagca-tagcaaactctttttactgttattat |
21249569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 21249519 - 21249473
Alignment:
| Q |
158 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgta |
204 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
21249519 |
gatcttttcattatccacattgcttgaagctttgagctttttatgta |
21249473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 21155294 - 21155407
Alignment:
| Q |
39 |
ccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaatcttgaatatcagccacaaactctttttactgttattat |
138 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | ||||||||||||||| |||||||| |
|
|
| T |
21155294 |
ccttcgttatttttcttcttttcttcaccttggatgcattgcacgaccttgttgtctttaaccttgaatctcaacaacaaactctttttacggttattat |
21155393 |
T |
|
| Q |
139 |
tattattctccttc |
152 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
21155394 |
cattattatccttc |
21155407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 21155455 - 21155518
Alignment:
| Q |
158 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcacca |
221 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
21155455 |
gatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgaccatgatcacca |
21155518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 3073644 - 3073704
Alignment:
| Q |
158 |
gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatca |
218 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
3073644 |
gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatca |
3073704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University