View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4162_low_20 (Length: 223)
Name: NF4162_low_20
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 41897264 - 41897457
Alignment:
| Q |
14 |
cagagacagaattgaaattaggaagctgagacaggaaaaaatggatgccaccaaaaatcataatccaataagtctgcttgatttgtgtacaactgatgaa |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41897264 |
cagaaacagaattgaaattaggaagctgagacaggaaaaaatggatgccaccaaaaatcataatccaataagtctgcttgatttgtgtacaactgatgaa |
41897363 |
T |
|
| Q |
114 |
tgctatctcaacaaaattctttagacacttcccaccaataaccatataaacagtgtcacacccaacttgtacaatcagttgctgaggtagaaca |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41897364 |
tgccatctcaacaaaattctttagacacttcccaccaataaccatataaacagtgtcacacccaacttgtacaatcagttgctgaggtagaaca |
41897457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 41893347 - 41893535
Alignment:
| Q |
19 |
acagaattgaaattaggaagctgagacaggaaaaaatggatgccaccaaaaatcataatccaataagtctgcttgatttgtgtacaactgatgaatgcta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
41893347 |
acagaattgaaattaggaagctgagacagaaaaaaatggatgccaccaaaaatcataatccaataagattgcttgatttgtgtacaatcagtgcatgcta |
41893446 |
T |
|
| Q |
119 |
tctcaacaaaattctttagacacttcccaccaataaccatataaacagtgtcacacccaacttgtacaatcagttgctgaggtagaaca |
207 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41893447 |
tctccacaaactgctttagacacttcccaccaataaccatatacacaatgtcacacccaacttgtacaatcagttgctgaggtagaaca |
41893535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 22548864 - 22548725
Alignment:
| Q |
19 |
acagaattgaaattaggaagctgagacaggaaaaaatggatgccaccaaaaatcataatccaataagtctgcttgatttgtgtacaactgatgaatgcta |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||||| ||| |||||||||||| |||||| |||| || |||| |||||| ||| || || |||| | |
|
|
| T |
22548864 |
acagagttgaaattgggaagctgagacagaaagaaatgaatggcaccaaaaatcaaaatccagtaagattgtttgagttgtgtgcaattggtgcatgcaa |
22548765 |
T |
|
| Q |
119 |
tctcaacaaaattctttagacacttcccaccaataaccat |
158 |
Q |
| |
|
|||| | || ||||||||||||||||| ||||| ||||| |
|
|
| T |
22548764 |
tctccatgaacttctttagacacttccctccaatgaccat |
22548725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University