View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_low_3 (Length: 434)
Name: NF4162_low_3
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 24436792 - 24437197
Alignment:
| Q |
11 |
cacagaaatattccacgtcttccctttttgcctcaaagaattgaaagactggtagagacaattcacagcttgtgaaagaaagacaaacaattcttatact |
110 |
Q |
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| T |
24436792 |
cacagaaatattccacgtcttccctttttgcctcaaagaattgaaagactggtagagacaattcacagcttgtgaaagaaagacaaacaattcttatact |
24436891 |
T |
|
| Q |
111 |
tgatacttccctccattattctatagtcataacctcttctcaaatttaacattttgnnnnnnngaatagagaaatgggtcgcattccatgctgtgagaag |
210 |
Q |
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| T |
24436892 |
tgatacttccctccattattctatagtcataacctcttctcaaatttaacattttgaaaaaaagaatagagaaatgggtcgcattccatgctgtgagaag |
24436991 |
T |
|
| Q |
211 |
gacaatgtgaagagaggtcagtggacacctgaggaagacaacaagctctcctcttacattgctcaacatggcacccgcaactggcgcctcattccaaaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24436992 |
gacaatgtgaagagaggtcagtggacacctgaggaagacaacaagctctcctcttacattgctcaacatggcacccgcaactggcgcctcattccaaaga |
24437091 |
T |
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| Q |
311 |
atgctggttagtccttctccctgttcgtataaatataatctgaatcaatgtcgataaaactaactttaatacttgatttttgtggattaaaataaatagg |
410 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437092 |
atgctggttagtccttctccctattcgtataaatataatctgaatcaatgtcaataaaactaactttaatacttgatttttgtggattaaaataaatagg |
24437191 |
T |
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| Q |
411 |
tcttca |
416 |
Q |
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|||||| |
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| T |
24437192 |
tcttca |
24437197 |
T |
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