View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4162_low_4 (Length: 421)
Name: NF4162_low_4
Description: NF4162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4162_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 48430822 - 48430434
Alignment:
| Q |
14 |
agtaaagcattgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtc |
113 |
Q |
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| T |
48430822 |
agtaaagcattgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaattcgttctagttctctttctatatcatagtc |
48430723 |
T |
|
| Q |
114 |
tttgtaacctgggttgtaggcgtttccaaattgatgaagaagagtaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgctttt |
213 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48430722 |
tttgtaacctgggttgtacgcgtttccaaattga---agaagagcaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgctttt |
48430626 |
T |
|
| Q |
214 |
gattcaattttctctgtgcatatttgaattcttcaacatcaacaggtggccaggggaaaggcaattttggctagtgcaagggaacttgaggatgaattat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48430625 |
gattcaattttctctgtgcatatttgaattcttcaacatcaacaggtggccaggggaaaggcaattttggctagtgcaagggaacttgaggctgaattat |
48430526 |
T |
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| Q |
314 |
ttggagagatgcaaacagttggaggctgagttacataaagggtgtcagaatagtcaactgatggggtcgtttgccaatgcattttacacagg |
405 |
Q |
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| T |
48430525 |
ttggagagatgcaaacagttggaggctgagttacatgaagggtgtcagaatagtcaactgatggggtcgtttaccaatgcattttacacagg |
48430434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 23627495 - 23627589
Alignment:
| Q |
23 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttg |
117 |
Q |
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| T |
23627495 |
ttgcttactatcctgactagagttatggaggagactccttcagttccattcacacaggagttcattctagttctctttatgtatcatagtctttg |
23627589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 52805821 - 52805622
Alignment:
| Q |
23 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttgtaacc |
122 |
Q |
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||||| |||||||| ||||||||| |||||||| ||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| | || |
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| T |
52805821 |
ttgcttactatcctaactagagttatggaggagactccttccgttcgatttgcacaagaattccttctagttctctttctgtatcatagtctttgca-cc |
52805723 |
T |
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| Q |
123 |
tgggtt-gtaggcgtttccaaattgatgaagaagagtaggcaagttt-ttctggaaatcttaacaaagtttatggagc-tttatcaatgcttttgattca |
219 |
Q |
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| T |
52805722 |
tggttttgtactcatgaagaatttgatcaagaagacacggcaagtttcttctgcaaatcttaacaaagtctatgtagcctttagcaatgcttttgattca |
52805623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 34114494 - 34114528
Alignment:
| Q |
159 |
aggcaagtttttctggaaatcttaacaaagtttat |
193 |
Q |
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| T |
34114494 |
aggcaagtttttctggaaatgttaacaaagtttat |
34114528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 34148677 - 34148710
Alignment:
| Q |
159 |
aggcaagtttttctggaaatcttaacaaagttta |
192 |
Q |
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| T |
34148677 |
aggcaagtttttctggaaatgttaacaaagttta |
34148710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 34161293 - 34161326
Alignment:
| Q |
159 |
aggcaagtttttctggaaatcttaacaaagttta |
192 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
34161293 |
aggcaagtttttctggaaatgttaacaaagttta |
34161326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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