View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_14 (Length: 325)
Name: NF4163_high_14
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 29433969 - 29434264
Alignment:
| Q |
14 |
cagcacagattaagtcaatgctagttgagagatttaagcgttcaacgtacgccagaagggtaaaatacaatattcaagaacaatcaaccaatgtaagcat |
113 |
Q |
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| T |
29433969 |
cagcacagattaagtcaatgctagttgagagatttaagcgttcaacgtacgccagaagggtaaaatacaatattcaagaacaatcaaccaatgtaagcat |
29434068 |
T |
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| Q |
114 |
ttatatttagctatacacttcattacatataattcaactgatatctatgccgagctgaaatcc-taggatattctttttctgtgccagtatcgtatccgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29434069 |
ttatatttagctatacacttcattacatataattcaactgatatctatgccgagctgaaatccttaggatattctttttctgtgccagtatcgtatccgg |
29434168 |
T |
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| Q |
213 |
tgtccgtgtcggtacttcataatcttgatttagttaatgataaatgtattacaggaagggattgaaactgagacaaactatggaagccaagctagt |
308 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29434169 |
tgtccgtgtcagtacttcataatcttgatttagttaatgataaatgtattacaggaagggattgaaactgagacaaactatggaagccaagctagt |
29434264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 29466890 - 29467185
Alignment:
| Q |
14 |
cagcacagattaagtcaatgctagttgagagatttaagcgttcaacgtacgccagaagggtaaaatacaatattcaagaacaatcaaccaatgtaagcat |
113 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
29466890 |
cagcacaaattaagtcaatgctagttgagagatttaagcgttcaacgtatgccagaagggtaaaagacaagattcaagaacaatcaaccaatgtaagcat |
29466989 |
T |
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| Q |
114 |
ttatatttagctatacacttcattacatataattcaactgatatctatgccgagctgaaatcct-aggatattctttttctgtgccagtatcgtatccgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||| ||| |||| |
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| T |
29466990 |
ttatatttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaaggatactctttttctgtgtcagtatagtaaccgg |
29467089 |
T |
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| Q |
213 |
tgtccgtgtcggtacttcataatcttgatttagttaatgataaatgtattacaggaagggattgaaactgagacaaactatggaagccaagctagt |
308 |
Q |
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|||||||||| || |||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
29467090 |
tgtccgtgtcagtcattcataatattgattttgttaatgataaatgtactacaggaagggcttgaaactgagataaaccttggaagccaagctagt |
29467185 |
T |
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