View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_15 (Length: 319)
Name: NF4163_high_15
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 38080004 - 38079703
Alignment:
| Q |
1 |
tttttgtctgaccactcttgaagtcatctccaccaatcaaactgttccttttgatggccagatcaatcaaccctaatgaaccatcatacaagcaaaattc |
100 |
Q |
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| T |
38080004 |
tttttgtctgaccactcttgaagtcatctccaccaatcaaactgttccttttgatggccagatcaatcaaccctaatgaaccatcatacaagcaaaattc |
38079905 |
T |
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| Q |
101 |
aattttttaaaaatttgcaacactcattggttacgttcataatataatggttacaagaaatttaatttgcatacataaaattaaaattaattaaagggca |
200 |
Q |
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| T |
38079904 |
aatttttttaaaatttgcaacactcattggttacgttcataatataatggtcacaagaaatttaatttgcatacataaaattaaaattaattaaagggca |
38079805 |
T |
|
| Q |
201 |
atttggaaaataacctgggacaaaggtgttttgagggcttccattgataaaaggaacattttcaagaacacaagccaaggcataaagggttgaaggtgaa |
300 |
Q |
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| T |
38079804 |
atttggaaaataacctgggacaaaggtgttttgagggcttccattgataaaaggaacattttcaagaacacaagccaaggcataaagggttgaaggtgaa |
38079705 |
T |
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| Q |
301 |
at |
302 |
Q |
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|| |
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| T |
38079704 |
at |
38079703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 39699355 - 39699265
Alignment:
| Q |
212 |
aacctgggacaaaggtgttttgagggcttccattgataaaaggaacattttcaagaacacaagccaaggcataaagggttgaaggtgaaat |
302 |
Q |
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| T |
39699355 |
aacctggaacaaaagtgttctgaggacttccattgatgaaaggaacattctccataacacaagcaatggcaaacagggtggaaggtgaaat |
39699265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39699511 - 39699445
Alignment:
| Q |
1 |
tttttgtctgaccactcttgaagtcatctccaccaatcaaactgttccttttgatggccagatcaat |
67 |
Q |
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|||| ||||||||||| ||||| ||||| ||||||||||||| ||| | |||||||| |||||||| |
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| T |
39699511 |
ttttggtctgaccacttttgaaatcatcaccaccaatcaaacagttgttcttgatggcaagatcaat |
39699445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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