View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_28 (Length: 250)
Name: NF4163_high_28
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 2115196 - 2114974
Alignment:
| Q |
29 |
ttatttgatcatttgttatagaatttgctaatacataggcacttataagataagtggttatgctatacacacacgtgattaagtcnnnnnnnnnn-gaaa |
127 |
Q |
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| T |
2115196 |
ttatttgatcatttgttatagaatttgctaatacataggtacttataagataagtggttatgctatacacacacgtgattaagtctttttttttttgaaa |
2115097 |
T |
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| Q |
128 |
gagttaacacataattaagttgttaagccaaacaaggaaaacaagacccgagttgtttaacgaatacagaaagtttagaaaatatggaattaaattaaag |
227 |
Q |
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| T |
2115096 |
gagtaaacacataattaagttgttaagccaaacaaggaaaacaagacccgagttgtttaacgaatacagaaagtttagaaaatatggaattaaattaaag |
2114997 |
T |
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| Q |
228 |
aaagagttgcacaaaacaaacct |
250 |
Q |
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| T |
2114996 |
aaagagttgcacaaaacaaacct |
2114974 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 22214758 - 22214830
Alignment:
| Q |
12 |
atgaacacaatttcaatttatttgatcatttgttatagaatttgctaatacataggcacttataagataagtg |
84 |
Q |
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||||| ||||||||| ||||||| ||| |||||||||||| | | ||||||| ||||||||| |||||||| |
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| T |
22214758 |
atgaatacaatttcactttattttatcctttgttatagaaataatttatacatacgcacttatacgataagtg |
22214830 |
T |
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