View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_30 (Length: 250)
Name: NF4163_high_30
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 22040702 - 22040465
Alignment:
| Q |
2 |
gtgagtgcatatcaaaaactagagtctatagcagcattattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggat |
101 |
Q |
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| T |
22040702 |
gtgagtgcatatcaaaaactagagtctatagcagtattattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggat |
22040603 |
T |
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| Q |
102 |
gtgcaccgaccatttaaacaaaatacaggaatatacaatagttgtggatttgcaaaaacattggcatgttctaaacatcttaagaggatctctcagttca |
201 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22040602 |
gtgcaccgaccatttaaacaaaatagaggaatatacaataattgtggatttgcaaaaacatcggcatgttctaaacatcttaagaggatctctcagttca |
22040503 |
T |
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| Q |
202 |
ttcaatgaagtatctatgccaaagttttctcagttcat |
239 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
22040502 |
ttcaatcaagtatctatgccaaagttttctcagttcat |
22040465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 22037797 - 22037602
Alignment:
| Q |
10 |
atatcaaaaactagagtctatagcagcattattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggatgtgcaccg |
109 |
Q |
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||||||||| ||||| || |||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||| |||| |||| |
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| T |
22037797 |
atatcaaaacctagactccatagcagcattattatcaagaacaagaatatatataaagtaaaatggttctcactctgcaaatcagc----atgt--accg |
22037704 |
T |
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| Q |
110 |
accatttaaacaaaatacaggaatatacaatagttgtggatttgcaaaaacattggcatgttctaaacatcttaagaggatctctcagttcattcaatga |
209 |
Q |
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| T |
22037703 |
accatttaaacaaaatagaagaatatacaataattgtggattttcaaaaacatcgacatggtctaaacatcttgagacgatctctcagttcattcaacga |
22037604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 22011653 - 22011555
Alignment:
| Q |
10 |
atatcaaaaactagagtctatagcagcattat----tatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggatgtg |
104 |
Q |
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||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
22011653 |
atatcaaaaactagattctatagcagaattatatattatcaagaacaagaatataaatcaagtaaaatggttcgcgctctgcaaatcagcgtggatgtg |
22011555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 18323890 - 18323794
Alignment:
| Q |
10 |
atatcaaaaactagagtctatag---cagcattattatcaagaacaagaaaataaatagagtaaaatggttcttgctctgcaaatcagggtggatgt |
103 |
Q |
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|||| |||||||||| ||||||| |||||| ||||||||||||||||| ||||||| | ||||||| ||||||| | |||||||| |||||||| |
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| T |
18323890 |
atatgaaaaactagattctatagtagcagcatcattatcaagaacaagaatataaataaaataaaatgattcttgcgcagcaaatcaatgtggatgt |
18323794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 22029284 - 22029241
Alignment:
| Q |
10 |
atatcaaaaactagagtctatagcagcattattatcaagaacaa |
53 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||||| |
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| T |
22029284 |
atattaaaaactagattctatagcagcattgttatcaagaacaa |
22029241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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