View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_31 (Length: 245)
Name: NF4163_high_31
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38287361 - 38287520
Alignment:
| Q |
1 |
tattcactatctatgtactgttggtattgatcatttcgattttgattgttaagaagtttgttgatcctaagtttgaggacgaaggtcatggtttacttct |
100 |
Q |
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| T |
38287361 |
tattcactatctatgtactgttggtattgatcatttcgattttgattgttaagaagtttgttgatcctaagtttgaggacgaaggtcatggtttacttct |
38287460 |
T |
|
| Q |
101 |
ttttctgctgaagtgaaactctatgaaacttgtagttagttagttcattcttttatccat |
160 |
Q |
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| T |
38287461 |
ttttctgctgaagtgaaactctatgaaacttgtagttagttagttcattcttttatccat |
38287520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 38120778 - 38120730
Alignment:
| Q |
90 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
138 |
Q |
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| T |
38120778 |
ggtttagttctttctctgctgaagtgaatctctatgaaatttgtagtta |
38120730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 38609342 - 38609390
Alignment:
| Q |
90 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
138 |
Q |
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| T |
38609342 |
ggtttagttctttctctgctgaagtgaatctctatgaaatttgtagtta |
38609390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 38794125 - 38794173
Alignment:
| Q |
90 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
138 |
Q |
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| T |
38794125 |
ggtttagttctttctctgctgaagtgaatctctatgaaatttgtagtta |
38794173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 28730353 - 28730307
Alignment:
| Q |
92 |
tttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
138 |
Q |
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||||||||||| ||||||||||| ||||| ||||||| ||||||||| |
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| T |
28730353 |
tttacttctttctctgctgaagtaaaactatatgaaatttgtagtta |
28730307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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