View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_35 (Length: 239)
Name: NF4163_high_35
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_35 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 15812563 - 15812343
Alignment:
| Q |
19 |
gagagtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctaggga |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812563 |
gagagtgaagtcatgaagtgtattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctaggga |
15812464 |
T |
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| Q |
119 |
gtgacacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812463 |
gtgacacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtcgaagaatgaagatcaaagttcaaaaaattctaaggataattc |
15812364 |
T |
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| Q |
219 |
tgttgatgaagaaaccttaac |
239 |
Q |
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|||||||||||||||| |||| |
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| T |
15812363 |
tgttgatgaagaaaccctaac |
15812343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 15799160 - 15798943
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
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||||||||| |||||| ||| |||||||||||| | || ||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||| |
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| T |
15799160 |
agtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtg |
15799061 |
T |
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| Q |
122 |
acacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgt |
221 |
Q |
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| T |
15799060 |
acacagtagaccttccgaaacccacgcaaccagcattttcagttggcagaaagtccaagaatgaagatcaaatttcaaaaaattctaaggataattctgt |
15798961 |
T |
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| Q |
222 |
tgatgaagaaaccttaac |
239 |
Q |
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||||||||||||| |||| |
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| T |
15798960 |
tgatgaagaaaccataac |
15798943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 15804774 - 15804563
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
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||||||||| |||||| ||| |||||||||||| | || ||||||||||| ||||||||| | ||||| ||||||| ||||||| ||||||||||||||| |
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| T |
15804774 |
agtgaagtcttgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtccaccgttgttagcatgctagggagtg |
15804675 |
T |
|
| Q |
122 |
acacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgt |
221 |
Q |
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| ||||||||||||||||||||||| |||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15804674 |
agacagtagaccttccaaaacccacgcaaccagcattttcagttggtagaaaacccaagaatgaagatcaaagttcaaaaaattataaggataattctgt |
15804575 |
T |
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| Q |
222 |
tgatgaagaaac |
233 |
Q |
| |
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|||||||||||| |
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| T |
15804574 |
tgatgaagaaac |
15804563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 15763742 - 15763547
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
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||||||||| |||||| ||| ||||||||||||||||| ||||||||||| ||||||||| | ||||| || |||| || ||||| ||||||||||||| |
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| T |
15763742 |
agtgaagtcttgaagtgtatacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgctagggagtg |
15763643 |
T |
|
| Q |
122 |
acacagtagaccttccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataatt |
217 |
Q |
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| ||||||| |||||| |||||| |||||||||| ||| |||| |||| |||||||||||| ||||||| |||||||| ||| |||||||||| |
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| T |
15763642 |
atacagtagctcttccacaacccaatcaaccagcattttcagttgggagaatgtccaagaatgatgatcaaacttcaaaaacttccaaggataatt |
15763547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 15721896 - 15721773
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
| |
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|||||||| ||||| | || ||||| ||||||||||| ||||||||||| ||||||||| | ||||| ||||||| ||||||| ||||||||| |||| |
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| T |
15721896 |
agtgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtg |
15721797 |
T |
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| Q |
122 |
acacagtagaccttccaaaaccca |
145 |
Q |
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||||| || ||||||||| |||| |
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| T |
15721796 |
acacaataacccttccaaatccca |
15721773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 15703182 - 15703099
Alignment:
| Q |
43 |
cacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgacaca |
126 |
Q |
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|||| ||||||||||||| |||||||||| ||||||||| | ||||| ||||||| ||| |||| ||||||||| ||||||||| |
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| T |
15703182 |
cacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacaca |
15703099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 15710816 - 15710695
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
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|||||||| ||||||| | ||||| ||||||||||| || || |||||||| |||||| | ||||| ||||||| | |||||| ||||||||| || | |
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| T |
15710816 |
agtgaagttatgaagtgcgtacacatcggtttattgtgtgtgcaggaagacgctgcagatcgaccaaccatgtccaccattgttctcatgctaggcagcg |
15710717 |
T |
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| Q |
122 |
acacagtagaccttccaaaacc |
143 |
Q |
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||||| | | |||||||||||| |
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| T |
15710716 |
acacaatggtccttccaaaacc |
15710695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 15696603 - 15696499
Alignment:
| Q |
22 |
agtgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtg |
121 |
Q |
| |
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||||| || ||||||| || ||||||||||||||||| |||||| |||| || |||||| | ||||| ||||||| || ||| |||||||| |||| |
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| T |
15696603 |
agtgaggttatgaagtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtg |
15696504 |
T |
|
| Q |
122 |
acaca |
126 |
Q |
| |
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||||| |
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| T |
15696503 |
acaca |
15696499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 4547275 - 4547173
Alignment:
| Q |
24 |
tgaagtcatgaagtttattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgac |
123 |
Q |
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|||||| ||||||| ||| || |||||||| ||||| ||||||||||| |||| ||||| ||||| ||||||| |||||| |||||| | |||||| |
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| T |
4547275 |
tgaagttatgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac |
4547176 |
T |
|
| Q |
124 |
aca |
126 |
Q |
| |
|
||| |
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|
| T |
4547175 |
aca |
4547173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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