View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_high_39 (Length: 227)

Name: NF4163_high_39
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_high_39
NF4163_high_39
[»] chr2 (1 HSPs)
chr2 (1-216)||(38990505-38990723)
[»] chr4 (4 HSPs)
chr4 (5-72)||(55318867-55318932)
chr4 (5-72)||(31950018-31950084)
chr4 (5-72)||(20632950-20633016)
chr4 (93-150)||(1058522-1058579)
[»] chr8 (1 HSPs)
chr8 (93-150)||(14939245-14939302)
[»] chr5 (2 HSPs)
chr5 (5-150)||(2779987-2780131)
chr5 (93-150)||(34030134-34030191)
[»] chr6 (1 HSPs)
chr6 (93-150)||(34988456-34988513)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38990723 - 38990505
Alignment:
Q  1 aatgattaaataactacataagttataagtgacataaaaata--gtagttgacacttgaaagagcaattaatccnnnnnnnn-tccttcataaatataga 97  Q
    |||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||         |||||||||||||||||    
T  38990723 aatgattaaataactacataagttataactgacataaaaaaaaagtagttgacacttgaaagagcaattaatccaaaaaaaaatccttcataaatataga 38990624  T
Q  98 agcatcatccctttataactccaaagttatctacaaaattaaacaatggttttaggtgaaagagagcaactcttataatgttgattggtccaacatatga 197  Q
     ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38990623 tgcatcatccctttataactccaaagttgtctgcaaaattaaacaatggttttaggtgaaagagagcaactcttataatgttgattggtccaacatatga 38990524  T
Q  198 ttcaaaatgtacaatcaag 216  Q
    ||||| |||||||||||||    
T  38990523 ttcaagatgtacaatcaag 38990505  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 55318867 - 55318932
Alignment:
Q  5 attaaataactacataagttataagtgacataaaaatagtagttgacacttgaaagagcaattaatcc 72  Q
    ||||||| | |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  55318867 attaaattattacataagttataagtgacacaaaaa--gtagttgacacttgaaagagcaattaatcc 55318932  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 31950018 - 31950084
Alignment:
Q  5 attaaataactacataagttataagtgacataaaaatagtagttgacacttgaaagagcaattaatcc 72  Q
    ||||||| | |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  31950018 attaaattattacataagttataagtgacacaaaaa-agtagtcgacacttgaaagagcaattaatcc 31950084  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 20633016 - 20632950
Alignment:
Q  5 attaaataactacataagttataagtgacataaaaatagtagttgacacttgaaagagcaattaatcc 72  Q
    ||||||| | |||||||||||||||||||| ||||| |||| | | ||||||||||| ||||||||||    
T  20633016 attaaattattacataagttataagtgacacaaaaa-agtaatcggcacttgaaagaacaattaatcc 20632950  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 1058522 - 1058579
Alignment:
Q  93 atagaagcatcatccctttataactccaaagttatctacaaaattaaacaatggtttt 150  Q
    ||||| ||||||||  || ||||||||||| ||||||||||||||||| || ||||||    
T  1058522 atagatgcatcatcgtttgataactccaaatttatctacaaaattaaataaaggtttt 1058579  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 14939302 - 14939245
Alignment:
Q  93 atagaagcatcatccctttataactccaaagttatctacaaaattaaacaatggtttt 150  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  14939302 atagatgcatcatcgcttgataactccaaagttatctacaaaattaaacaaaggtttt 14939245  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 2780131 - 2779987
Alignment:
Q  5 attaaataactacataagttataagtgacataaaaatagtagttgacacttgaaagagcaattaatccnnnnnnnntccttcataaatatagaagcatca 104  Q
    ||||||| | |||||||||||||||||||| ||||| ||||||  ||||||| |||||||||||||||        || ||| | || ||||| ||||||    
T  2780131 attaaatgattacataagttataagtgacacaaaaa-agtagtatacacttggaagagcaattaatcccaaaaaaatcattcttgaagatagatgcatca 2780033  T
Q  105 tccctttataactccaaagttatctacaaaattaaacaatggtttt 150  Q
    || ||| ||| |||||||||||| ||| |||| |||||| ||||||    
T  2780032 tcacttgatagctccaaagttatttacgaaataaaacaaaggtttt 2779987  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 34030191 - 34030134
Alignment:
Q  93 atagaagcatcatccctttataactccaaagttatctacaaaattaaacaatggtttt 150  Q
    ||||| ||||||||  || ||||||||||| ||||||||||||||||| || ||||||    
T  34030191 atagatgcatcatcgtttgataactccaaatttatctacaaaattaaataaaggtttt 34030134  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 34988513 - 34988456
Alignment:
Q  93 atagaagcatcatccctttataactccaaagttatctacaaaattaaacaatggtttt 150  Q
    ||||| |||||||| ||| |||| ||||||||||||||||||||||||||| ||||||    
T  34988513 atagatgcatcatcacttgataaatccaaagttatctacaaaattaaacaaaggtttt 34988456  T

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