View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_4 (Length: 469)
Name: NF4163_high_4
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 26960419 - 26959981
Alignment:
| Q |
18 |
gaatgcttgtgagggcccctagtggaacgggtgtgttttatcagactcgaaattcgtaagttgcaaaatgtcaccaataccatatctacttgataaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960419 |
gaatgcttgtgagggcccctagtggaacgggtgtgttttatcagactcgatattcgtaagttgcaaaatgtcaccaataccatatctacttgataaacat |
26960320 |
T |
|
| Q |
118 |
tgtttcatgctagctgaattagttgggtttttctttccctttagaaaagatgtcactgccgacatggtcaacatgaatgnnnnnnngctctttatggaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26960319 |
tgtttcatgctagctgaattagttgggtttttctttccctttagaaaagatgtcactgccgacatggtcaacatgaatgaaaaaaagctctttatggaag |
26960220 |
T |
|
| Q |
218 |
gtacgaagttagtggctatcatctctgaagcagggtccgctggcgtttcgttacaggctgaccgaagagtaaaaaatcaggtaatcaaacttcttgaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960219 |
gtacgaagttagtggctatcatctctgaagcaggatcagctggcgtttcgttacaggctgaccgaagagtaaaaaatcaggtaatcaaacttcttgaaat |
26960120 |
T |
|
| Q |
318 |
atttctatcccttgaatcactagtgttctctctgtcctattattttgatggttttttgcaaatagtctgctcagaagctagtaatattatactattttgt |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960119 |
atttctatcccttgaatcacta-tgttctctctgtcctattattttgatggttttttgcaaatagtctgctcagaagctagtaatattatactattttgt |
26960021 |
T |
|
| Q |
418 |
gaacttttcaattgtttgttttattcttcttttgctgttc |
457 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
26960020 |
gaacttttcaattgtttgttttattcttctttttctgttc |
26959981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 26848039 - 26847643
Alignment:
| Q |
18 |
gaatgcttgtgagggcccctagtggaacgggtgtgttttatcagactcgaaattcgtaagttgcaaaatgtcaccaataccatatctacttgataaacat |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || |||||||||| |||||| ||||||||||| |
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| T |
26848039 |
gaatgcttgtgagggccccaagtggaacgggtgtgttttatcagactcgaaatacgtgagtttcataatgtcacca------tatctaattgataaacat |
26847946 |
T |
|
| Q |
118 |
tgtttcatgctagctgaattagttgggtttttctttccctttagaaaagatgtcactgccgacatggtcaacatgaatgnnnnnnngctctttatggaag |
217 |
Q |
| |
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|||||||| ||| ||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
26847945 |
caattcatgcttgcttaattagttgtgttcctc----cctttagaaaagatgtcactgccgagatggtcaacatgaatgagaaaaagctctttatggaag |
26847850 |
T |
|
| Q |
218 |
gtacgaagttagtggctatcatctctgaagcagggtccgctggcgtttcgttacaggctgaccgaagagtaaaaaatcaggtaatcaaacttcttg-aaa |
316 |
Q |
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||| |||||||||||| |||||||||||||| || || ||||| |||||||| ||||| ||||||||||| | ||||||||||||||||||| ||| ||| |
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| T |
26847849 |
gtaagaagttagtggccatcatctctgaagctggatcagctggtgtttcgttgcaggcagaccgaagagtgataaatcaggtaatcaaactttttgaaaa |
26847750 |
T |
|
| Q |
317 |
tatttctatcccttgaatcactagtgttctctctgtcctattattttgatggttttttgcaaatagtctgctcagaagctagtaatattatactattttg |
416 |
Q |
| |
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||||||||||||||||||||| ||||| | |||||| |||| |||||||| |||||||||||| ||||||||||||||||| |||| ||| ||| |
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| T |
26847749 |
tatttctatcccttgaatcaccagtgt--tttctgtc--atta-tttgatgg-tttttgcaaatattctgctcagaagctagtgatat-----tatcttg |
26847661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 34666619 - 34666332
Alignment:
| Q |
18 |
gaatgcttgtgagggcccctagtggaacgggtgtgttttatcagactcgaaattcgtaagttgcaaaatgtcaccaataccatatctacttgataaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666619 |
gaatgcttgtgagggcccctagtggaacgggtgtgttttatcagactcgatattcgtaagttgcaaaatgtcaccaataccatatctacttgataaacat |
34666520 |
T |
|
| Q |
118 |
tgtttcatgctagctgaattagttgggtttttctttccctttagaaaagatgtcactgccgacatggtcaacatgaatgnnnnnnngctctttatggaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34666519 |
tgtttcatgctagctgaattagttgggtttttctttccctttagaaaagatgtcactgccgacatggtcaacatgaatgaaaaaaagctctttatggaag |
34666420 |
T |
|
| Q |
218 |
gtacgaagttagtggctatcatctctgaagcagggtccgctggcgtttcgttacaggctgaccgaagagtaaaaaatcaggtaatcaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666419 |
gtacgaagttagtggctatcatctctgaagcaggatcagctggcgtttcgttacaggctgaccgaagagtaaaaaatcaggtaatcaa |
34666332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 338 - 457
Target Start/End: Complemental strand, 34666330 - 34666211
Alignment:
| Q |
338 |
tagtgttctctctgtcctattattttgatggttttttgcaaatagtctgctcagaagctagtaatattatactattttgtgaacttttcaattgtttgtt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666330 |
tagtgttctctctgtcctattattttgatggttttttgcaaatagtctgctcagaagctagtaatattatactattttgtgaacttttcaattgtttgtt |
34666231 |
T |
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| Q |
438 |
ttattcttcttttgctgttc |
457 |
Q |
| |
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||||||||||||| |||||| |
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| T |
34666230 |
ttattcttctttttctgttc |
34666211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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