View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_high_42 (Length: 216)
Name: NF4163_high_42
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 35232579 - 35232752
Alignment:
| Q |
30 |
ttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtac |
129 |
Q |
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| T |
35232579 |
ttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtac |
35232678 |
T |
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| Q |
130 |
aacaggacatagattgttggtttataaacattctttgttgttggcacgatccattctttatccaccaagaataa |
203 |
Q |
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| T |
35232679 |
aacaggacatagattgttggtttataatcattctttgttgttggcacgatccattctttatccaccaagaataa |
35232752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 29287022 - 29287098
Alignment:
| Q |
118 |
aaaatcatgtacaacaggacatagattgttggtttataaacattctttgttgttggcacgatccattctttatccaccaa |
197 |
Q |
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| T |
29287022 |
aaaatcatgtacaataggacatagattgttggtttataatca---tttattgttggcgcgatcccttctctaaccaccaa |
29287098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 25999768 - 25999894
Alignment:
| Q |
43 |
cctttgaaatcaaagt-ttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtacaacaggacatag |
141 |
Q |
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|||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||| | |||||| || |||||| |||||||||||||||||||| |
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| T |
25999768 |
cctttgaaatcaaactcttttaataatgtgacaacatgtgactgaaa-ttttaataatgatagtagatccaattgaaaattcatgtacaacaggacatag |
25999866 |
T |
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| Q |
142 |
attgttggtttataaacattctttgttg |
169 |
Q |
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| T |
25999867 |
atcgttggtttataatcattctttgttg |
25999894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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