View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4163_low_10 (Length: 375)
Name: NF4163_low_10
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_10 |
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| [»] scaffold0236 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 43704205 - 43703858
Alignment:
| Q |
17 |
acccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaaggg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43704205 |
acccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaaggg |
43704106 |
T |
|
| Q |
117 |
aagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttg |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704105 |
aagcagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttg |
43704006 |
T |
|
| Q |
217 |
aggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704005 |
aggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgct |
43703906 |
T |
|
| Q |
317 |
gcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43703905 |
gcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43703858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 43715176 - 43714829
Alignment:
| Q |
17 |
acccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaaggg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43715176 |
acccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaaggg |
43715077 |
T |
|
| Q |
117 |
aagaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttg |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43715076 |
aagcagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttg |
43714977 |
T |
|
| Q |
217 |
aggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43714976 |
aggtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgct |
43714877 |
T |
|
| Q |
317 |
gcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714876 |
gcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
43714829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 43687345 - 43687000
Alignment:
| Q |
19 |
ccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaa |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| || | || ||||| ||||| |||||||||||||| || ||||||||||||||||||| | | |
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|
| T |
43687345 |
ccacccttcatttcctccacttgaagtagtgttttcaatcgtactgaatacaaaagaagataccaagtttccggcagccattgccaatccagaaagtgca |
43687246 |
T |
|
| Q |
119 |
gaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgag |
218 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
43687245 |
gaagaaacactagacatagtctttggaaactctttgtaataaaactcattttggccaataacattgaatgcttcagctataccagccaaacaaagttgag |
43687146 |
T |
|
| Q |
219 |
gtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | | ||||||| ||||||||||| | |||||||||||||||| |
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|
| T |
43687145 |
gtgcaagccacattgcagacattttcaacactccatgagtattattcaaaaatcctgcctgtattgctttctttctccttatactctcaaaaattgctgc |
43687046 |
T |
|
| Q |
319 |
agttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
| || | |||||||||||||||||||||||||| |||||||||| |
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|
| T |
43687045 |
aactacaatgtgaagaaaattaaaaaacaacccaagtcccattctt |
43687000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 43728908 - 43728563
Alignment:
| Q |
19 |
ccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaa |
118 |
Q |
| |
|
||||||||| |||||||| || | |||| | |||||||| || | ||||| ||||| ||||||||||||||| || ||||| |||||||| |||||||| |
|
|
| T |
43728908 |
ccacccttcttttcctcctctcgaagtaacgttttctatagtgttgaatacaaaagaagataccaagtttcctgcagccattcccaatccacaaagggaa |
43728809 |
T |
|
| Q |
119 |
gaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgag |
218 |
Q |
| |
|
| || || |||||||||| || | ||||||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||| ||||||||||||||| |
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|
| T |
43728808 |
gcagaaatactagacatagtcctcggaaactctttgtaatagaattcattttggccaatagcattgaatgcttcgcttataccacccaaacaaagttgag |
43728709 |
T |
|
| Q |
219 |
gtgcaagccacattgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgc |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| | | ||||||| |||||||||| | |||||||| ||||| |
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|
| T |
43728708 |
gtgcaagccacaatgcagacattttcaacacgccatgagtatcattcaaaaatcctgcctgaattgctttttttctccttatactctcaaaagcagctgc |
43728609 |
T |
|
| Q |
319 |
agttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
43728608 |
agttaccaagtggagaaaatttaaaaacaacccaattcccattctt |
43728563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 25274280 - 25274045
Alignment:
| Q |
19 |
ccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaa |
118 |
Q |
| |
|
|||||| || |||||||| |||| ||||||| |||||| |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| ||| |
|
|
| T |
25274280 |
ccacccatcttttcctcctcttgaagtagtgttttctacaatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaa |
25274181 |
T |
|
| Q |
119 |
gaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgag |
218 |
Q |
| |
|
| || |||||||||||| | ||||||||||| |||||||||||||||| ||||| || | ||||| ||| | ||||||||| | ||||||||||| |
|
|
| T |
25274180 |
gcggcgacactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaaattgactgcttcagatataccagctagacaaagttgag |
25274081 |
T |
|
| Q |
219 |
gtgcaagccacattgcagacattttcaacactccat |
254 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
25274080 |
gtgcaagccacaatgccgacatttccaacactccat |
25274045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 25274032 - 25273959
Alignment:
| Q |
291 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||| | ||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
25274032 |
ttctccttatagtctcaaaaatcgctgcatttaccgagtagagaaaagataaaaacaaaccaattcccattctt |
25273959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 23448 - 23683
Alignment:
| Q |
19 |
ccacccttcatttcctccacttggagtagtgctttctataatgctcaatactaaagaggataccaagtttcctacacccattgccaatccagaaagggaa |
118 |
Q |
| |
|
|||||| || |||||||| |||| ||||||| |||||| |||||| || | |||||| ||||||||| ||||| || ||||| ||||||||||||| ||| |
|
|
| T |
23448 |
ccacccatcttttcctcctcttgaagtagtgttttctacaatgctgaacaataaagaagataccaagcttcctgcagccattcccaatccagaaagcgaa |
23547 |
T |
|
| Q |
119 |
gaagcaacactagacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgag |
218 |
Q |
| |
|
| ||| |||||||||||| | ||||||||||| |||||||||||||||| ||||| || | |||| ||| | ||||||||||| ||| ||||||| |
|
|
| T |
23548 |
gcagcgacactagacatagtacttggaaactctgtgtaataaaactcattttggcctatgaatttgactgcttcagatataccagccagacagagttgag |
23647 |
T |
|
| Q |
219 |
gtgcaagccacattgcagacattttcaacactccat |
254 |
Q |
| |
|
|||||||||||| ||| || |||| ||| ||||||| |
|
|
| T |
23648 |
gtgcaagccacaatgccgaaatttccaaaactccat |
23683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 23696 - 23769
Alignment:
| Q |
291 |
ttctccttacagtctcaaaaattgctgcagttatcaagtgaagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
23696 |
ttctccttatagtctcaaaaattgctgcatttactaagtggagaaaagataaaaacaaaccaattcccattctt |
23769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 364
Target Start/End: Complemental strand, 2690833 - 2690600
Alignment:
| Q |
131 |
gacatactctttggaaactctttgtaataaaactcattctggccaataacattgaacatttctgctataccagccaaacaaagttgaggtgcaagccaca |
230 |
Q |
| |
|
|||||| |||| ||||| || |||| || |||||||| ||||| ||||||||||| ||| ||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
2690833 |
gacatagtcttgggaaattcggtgtagtagaactcattttggcctataacattgaatgcttcagctattccacccaagcaaagttgaggaaaaagccaca |
2690734 |
T |
|
| Q |
231 |
ttgcagacattttcaacactccatgagtatcattcaaatatccttctttgattgcttcctttctccttacagtctcaaaaattgctgcagttatcaagtg |
330 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||| ||||||||| ||||||||| ||| ||||| |||||| | ||||| ||| |||| |||||| |
|
|
| T |
2690733 |
ttgcagacatgttcaacactgaatgaggatcattaccatatccttcattgattgctcttcttcgccttatagtctcgacaattgatgcggttaccaagtg |
2690634 |
T |
|
| Q |
331 |
aagaaaattaaaaaacaacccaattcccattctt |
364 |
Q |
| |
|
|||||| |||||||| || | |||||||||| |
|
|
| T |
2690633 |
gagaaaagagaaaaacaatccgagtcccattctt |
2690600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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